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v3.2.3

TRANSIT MANUAL

  • TRANSIT Overview
  • Installation
  • Running TRANSIT
  • Quality Control
  • Analysis Methods (Expand Me First!)
  • Console Mode Cheat-Sheet

TRANSIT Tutorials

  • Tutorial: Genetic Interactions Analysis
  • Tutorial: Normalize datasets
  • Tutorial: Export datasets

TPP Manual

  • TPP Overview
  • Installation
  • Running TPP
  • Mapping to Genomes with Multiple Contigs
  • Overview of Data Processing Procedure
  • Statistics

Code Documentation

  • transit package
TRANSIT
  • »
  • Overview: module code

All modules for which code is available

  • pytransit.analysis.anova
  • pytransit.analysis.base
  • pytransit.analysis.binomial
  • pytransit.analysis.example
  • pytransit.analysis.griffin
  • pytransit.analysis.gumbel
  • pytransit.analysis.hmm
  • pytransit.analysis.rankproduct
  • pytransit.analysis.resampling
  • pytransit.analysis.tn5gaps
  • pytransit.draw_trash
  • pytransit.fileDisplay
  • pytransit.norm_tools
  • pytransit.qcDisplay
  • pytransit.stat_tools
  • pytransit.tnseq_tools
  • pytransit.transit_gui
  • pytransit.transit_tools
  • pytransit.trash
  • pytransit.view_trash

© Copyright 2015, Michael A. DeJesus & Thomas R. Ioerger.

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