{% macro sample_prep(case) %} {% set workflow = case.data_analysis.workflow %}

Provberedning

{% for sample in case.samples %} {% endfor %}
Prov Ankom Beredd Sekvenserad Biblioteksberedning {{ bait_set(workflow=workflow, analysis_type=case.data_analysis.type) }} Sekvensering Mottagningskvalitetskontroll
{{ sample.name }} ({{ sample.id }}) {{ sample.timestamps.received_at }} {{ sample.timestamps.prepared_at }} {{ sample.timestamps.reads_updated_at }} {{ sample.methods.library_prep }} {{ bait_set_value(workflow=workflow, analysis_type=case.data_analysis.type, sample=sample) }} {{ sample.methods.sequencing }} {{ sample.metadata.initial_qc }}
{% endmacro %} {% macro bait_set(workflow, analysis_type) %} {% if ("balsamic" in workflow and "panelsekvensering" in analysis_type) or (workflow == "mip-dna" and analysis_type == "wes") %} Bait Set {% endif %} {% endmacro %} {% macro bait_set_value(workflow, analysis_type, sample) %} {% if ("balsamic" in workflow and "panelsekvensering" in analysis_type) or (workflow == "mip-dna" and analysis_type == "wes") %} {{ sample.metadata.bait_set }} {% if "balsamic" in workflow and sample.metadata.bait_set != "N/A" %} (v{{sample.metadata.bait_set_version }}) {% endif %} {% endif %} {% endmacro %}