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Getting Started

  • Installation
    • Virtual Environment
    • Installation from PyPI
    • Installation from Github
    • Testing species
  • Running species
    • Initiating species
    • Adding a photometric library
    • Adding companion data
    • Reading color-magnitude data
    • Plotting a color-magnitude diagram

User Documentation

  • Overview
    • Introduction
    • Supported data
    • Analysis tools
    • Output boxes
  • Configuration
  • Tutorials
    • Flux and magnitude conversion
    • Synthetic photometry
    • Spectral library
    • Color-magnitude diagram: broadband filters
      • Initiating species
      • Adding data to the database
      • Database content
      • Synthetic photometry from isochrones
      • Photometry of directly imaged objects
      • Reading color-magnitude data
      • Plotting a color-magnitude diagram
    • Color-magnitude diagram: narrowband filters
      • Getting started
      • Adding data and models
      • Synthetic colors and magnitudes
      • Selecting directly imaged planets
      • Plotting a color-magnitude diagram
    • Atmospheric models
      • Getting started
      • Adding model spectra to the database
      • Interpolating the model grid
      • Extracting a spectrum at a grid point
      • Calculating synthetic photometry
    • Comparison of data and model
      • Initiating species
      • Adding model spectra
      • Adding companion data
      • Reading model spectra
      • Reading companion data
      • Synthetic photometry for all filters
      • Creating flux residuals
      • Opening Box objects
      • Plotting spectra, fluxes and filters
    • Photometric calibration: fitting a stellar spectrum
      • Getting started
      • Adding an object and calibration spectrum
      • Fitting the stellar spectrum
      • Plotting the results
      • Photometric calibration
    • Fitting photometry with model spectra
  • API documentation
    • species package
      • Subpackages
        • species.analysis package
          • Submodules
          • species.analysis.fit_model module
          • species.analysis.fit_planck module
          • species.analysis.fit_spectrum module
          • species.analysis.photometry module
          • Module contents
        • species.core package
          • Submodules
          • species.core.box module
          • species.core.constants module
          • species.core.setup module
          • Module contents
        • species.data package
          • Submodules
          • species.data.ames_cond module
          • species.data.ames_dusty module
          • species.data.btnextgen module
          • species.data.btsettl module
          • species.data.companions module
          • species.data.database module
          • species.data.drift_phoenix module
          • species.data.filters module
          • species.data.irtf module
          • species.data.isochrones module
          • species.data.leggett module
          • species.data.petitcode module
          • species.data.queries module
          • species.data.spex module
          • species.data.vega module
          • species.data.vlm_plx module
          • Module contents
        • species.plot package
          • Submodules
          • species.plot.plot_color module
          • species.plot.plot_mcmc module
          • species.plot.plot_spectrum module
          • Module contents
        • species.read package
          • Submodules
          • species.read.read_calibration module
          • species.read.read_color module
          • species.read.read_filter module
          • species.read.read_isochrone module
          • species.read.read_model module
          • species.read.read_object module
          • species.read.read_planck module
          • species.read.read_spectrum module
          • Module contents
        • species.util package
          • Submodules
          • species.util.data_util module
          • species.util.phot_util module
          • species.util.plot_util module
          • species.util.read_util module
          • species.util.test_util module
          • Module contents
      • Module contents

About species

  • Contributing
  • About
    • Questions & feedback
    • Attribution
species
  • Docs »
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