Index

B

BackProjectionNet (class in pytomography.projections) (class in pytomography.projections.back_projection)

C

CallBack (class in pytomography.callbacks) (class in pytomography.callbacks.callback) compute_kernel_size() (pytomography.mappings.SPECT.psf.SPECTPSFNet method) (pytomography.mappings.SPECT.SPECTPSFNet method) (pytomography.mappings.SPECTPSFNet method) compute_pad_size() (in module pytomography.utils) (in module pytomography.utils.helper_functions)

compute_pad_size_padded() (in module pytomography.utils.helper_functions) compute_padded_shape() (pytomography.metadata.ImageMeta method) (pytomography.metadata.metadata.ImageMeta method) (pytomography.metadata.metadata.ObjectMeta method) (pytomography.metadata.ObjectMeta method)

D

device (in module pytomography) dicom_CT_to_data() (in module pytomography.io) (in module pytomography.io.dicom) dicom_MEW_to_data() (in module pytomography.io) (in module pytomography.io.dicom)

dicom_projections_to_data() (in module pytomography.io) (in module pytomography.io.dicom) DiffAndSumSmoothnessPrior (class in pytomography.priors.relative_difference)

F

find_first_entry_containing_header() (in module pytomography.io.simind) forward() (pytomography.algorithms.osem.OSEMBSR method) (pytomography.algorithms.osem.OSEMOSL method) (pytomography.algorithms.osem.OSML method) (pytomography.algorithms.OSEMBSR method) (pytomography.algorithms.OSEMOSL method) (pytomography.algorithms.OSML method) (pytomography.mappings.MapNet method) (pytomography.mappings.mapping.MapNet method) (pytomography.mappings.SPECT.atteunation.SPECTAttenuationNet method) (pytomography.mappings.SPECT.psf.SPECTPSFNet method) (pytomography.mappings.SPECT.SPECTAttenuationNet method) (pytomography.mappings.SPECT.SPECTPSFNet method) (pytomography.mappings.SPECTAttenuationNet method) (pytomography.mappings.SPECTPSFNet method) (pytomography.priors.Prior method) (pytomography.priors.prior.Prior method) (pytomography.priors.relative_difference.DiffAndSumSmoothnessPrior method) (pytomography.priors.smoothness.SmoothnessPrior method) (pytomography.projections.back_projection.BackProjectionNet method) (pytomography.projections.BackProjectionNet method) (pytomography.projections.forward_projection.ForwardProjectionNet method) (pytomography.projections.ForwardProjectionNet method)

ForwardProjectionNet (class in pytomography.projections) (class in pytomography.projections.forward_projection) foward() (pytomography.projections.projection.ProjectionNet method) (pytomography.projections.ProjectionNet method)

G

get_affine_CT() (in module pytomography.io.dicom) get_affine_spect() (in module pytomography.io.dicom) get_distance() (in module pytomography.utils) (in module pytomography.utils.helper_functions) get_HU2mu_coefficients() (in module pytomography.io.dicom) get_kernel() (pytomography.priors.relative_difference.DiffAndSumSmoothnessPrior method) (pytomography.priors.smoothness.SmoothnessPrior method) get_prob_of_detection_matrix() (in module pytomography.mappings.SPECT.atteunation) get_PSF_transform() (in module pytomography.mappings.SPECT.psf) get_radii_and_angles() (in module pytomography.io.dicom)

get_sigma() (pytomography.mappings.SPECT.psf.SPECTPSFNet method) (pytomography.mappings.SPECT.SPECTPSFNet method) (pytomography.mappings.SPECTPSFNet method) get_SPECT_recon_algorithm_dicom() (in module pytomography.io) (in module pytomography.io.dicom) get_SPECT_recon_algorithm_simind() (in module pytomography.io) (in module pytomography.io.simind) get_subset_splits() (pytomography.algorithms.osem.OSML method) (pytomography.algorithms.OSML method) gradient() (pytomography.priors.relative_difference.RelativeDifferencePrior method) (pytomography.priors.RelativeDifferencePrior method)

H

HU_to_mu() (in module pytomography.io.dicom)

I

ImageMeta (class in pytomography.metadata) (class in pytomography.metadata.metadata) initialize_correction_nets() (pytomography.projections.projection.ProjectionNet method) (pytomography.projections.ProjectionNet method)

initialize_network() (pytomography.mappings.MapNet method) (pytomography.mappings.mapping.MapNet method) (pytomography.mappings.SPECT.psf.SPECTPSFNet method) (pytomography.mappings.SPECT.SPECTPSFNet method) (pytomography.mappings.SPECTPSFNet method)

L

LogCoshPrior (class in pytomography.priors) (class in pytomography.priors.smoothness)

M

MapNet (class in pytomography.mappings) (class in pytomography.mappings.mapping) module pytomography pytomography.algorithms pytomography.algorithms.osem pytomography.callbacks pytomography.callbacks.callback pytomography.io pytomography.io.dicom pytomography.io.simind pytomography.mappings pytomography.mappings.mapping pytomography.mappings.SPECT pytomography.mappings.SPECT.atteunation pytomography.mappings.SPECT.psf pytomography.metadata pytomography.metadata.metadata pytomography.priors pytomography.priors.prior pytomography.priors.relative_difference pytomography.priors.smoothness pytomography.projections pytomography.projections.back_projection pytomography.projections.forward_projection pytomography.projections.projection pytomography.utils pytomography.utils.helper_functions

O

ObjectMeta (class in pytomography.metadata) (class in pytomography.metadata.metadata) OSEMBSR (class in pytomography.algorithms) (class in pytomography.algorithms.osem)

OSEMOSL (class in pytomography.algorithms) (class in pytomography.algorithms.osem) OSML (class in pytomography.algorithms) (class in pytomography.algorithms.osem)

P

pad_image() (in module pytomography.utils) (in module pytomography.utils.helper_functions) pad_object() (in module pytomography.utils) (in module pytomography.utils.helper_functions) pad_object_z() (in module pytomography.utils) (in module pytomography.utils.helper_functions) Prior (class in pytomography.priors) (class in pytomography.priors.prior) ProjectionNet (class in pytomography.projections) (class in pytomography.projections.projection) PSFMeta (class in pytomography.metadata) (class in pytomography.metadata.metadata) pytomography module pytomography.algorithms module pytomography.algorithms.osem module pytomography.callbacks module pytomography.callbacks.callback module pytomography.io module pytomography.io.dicom module pytomography.io.simind module pytomography.mappings module pytomography.mappings.mapping module

pytomography.mappings.SPECT module pytomography.mappings.SPECT.atteunation module pytomography.mappings.SPECT.psf module pytomography.metadata module pytomography.metadata.metadata module pytomography.priors module pytomography.priors.prior module pytomography.priors.relative_difference module pytomography.priors.smoothness module pytomography.projections module pytomography.projections.back_projection module pytomography.projections.forward_projection module pytomography.projections.projection module pytomography.utils module pytomography.utils.helper_functions module

Q

QuadraticPrior (class in pytomography.priors) (class in pytomography.priors.smoothness)

R

relation_dict (in module pytomography.io.simind) RelativeDifferencePrior (class in pytomography.priors) (class in pytomography.priors.relative_difference) rev_cumsum() (in module pytomography.utils) (in module pytomography.utils.helper_functions)

rotate_detector_z() (in module pytomography.utils) (in module pytomography.utils.helper_functions) run() (pytomography.callbacks.CallBack method) (pytomography.callbacks.callback.CallBack method)

S

set_beta_scale() (pytomography.priors.Prior method) (pytomography.priors.prior.Prior method) set_device() (pytomography.priors.Prior method) (pytomography.priors.prior.Prior method) set_kernel() (pytomography.priors.relative_difference.DiffAndSumSmoothnessPrior method) (pytomography.priors.smoothness.SmoothnessPrior method) set_object() (pytomography.priors.Prior method) (pytomography.priors.prior.Prior method) set_object_meta() (pytomography.priors.Prior method) (pytomography.priors.prior.Prior method) simind_CT_to_data() (in module pytomography.io) (in module pytomography.io.simind)

simind_MEW_to_data() (in module pytomography.io) (in module pytomography.io.simind) simind_projections_to_data() (in module pytomography.io) (in module pytomography.io.simind) SmoothnessPrior (class in pytomography.priors.smoothness) SPECTAttenuationNet (class in pytomography.mappings) (class in pytomography.mappings.SPECT) (class in pytomography.mappings.SPECT.atteunation) SPECTPSFNet (class in pytomography.mappings) (class in pytomography.mappings.SPECT) (class in pytomography.mappings.SPECT.psf)

U

unpad_image() (in module pytomography.utils) (in module pytomography.utils.helper_functions) unpad_object() (in module pytomography.utils) (in module pytomography.utils.helper_functions)

unpad_object_z() (in module pytomography.utils) (in module pytomography.utils.helper_functions)