{% extends "layout.html" %}
{% from "macros.html" import igv_open_file, all_link %}
{% block caption %}{% endblock %}
{% block title %}Structural{% endblock %}
{% block body %}
-
Parameters
Name | Value |
Case |
{% for sample in query.case %}
{{ sample }}{% if not loop.last %}, {% endif %}
{% endfor %}
|
Chromosomes |
{% for chrom in query.chromosomes %}
{{ chrom }}{% if not loop.last %}, {% endif %}
{% endfor %}
|
|
# |
Sample |
Position |
Type |
Length |
Gene-ID |
Links |
{% for r in results %}
|
{{ loop.index }} |
{{ igv_open_file('bam' + "/" + r.sample + '.bam', r.sample) }}
|
{{ r.chrom }}:{{ r.start }}-{{ r.end }} |
{{ r.typ }} |
{{ r.length }} |
{{ r.gene_id }} |
{{ all_link(r.chrom, r.start, None, None, r.end+1) }}
{% endfor%}
{% endblock %}