+ |
{{ loop.index }} |
{% for symbol in r.symbols %}
{% set s = symbol.decode() %}
{{ ensemble_link(s) }}{% if not loop.last %}, {% endif %}
{% endfor %}
|
{{ r.common | length }} |
{% for s in r.samples %}
{{ igv_open_file('bam' + "/" + s + '.bam', s) }}
{% if not loop.last %}, {% endif %}
{% endfor %}{{ list_out() }}
|
{{ r.effect|effects }} |
{{ r.heterozygot|heterozygosity}} |
{% if r.typ < 4 %}
{{ r.ref }}>{{ "ACGT"[r.typ] }} |
{% else %}
|
{% endif %}
{{ r.maxqual }} |
{{ (r.minaf) | round(2) }} - {{ (r.maxaf) | round(2) }} |
{{ r.chrom }}:{{ r.position }} |
{{ ["MODIFIER", "LOW", "MODERATE", "HIGH"][r.maximpact] }} |
{{ all_link(r.chrom, r.position) }}
|
{% endfor%}