Input VCF file:
Sample Name:
Alleles:
Prediction Algorithms:

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Epitope Lengths:
Peptide Sequence Length:
NetChop Method: Skip NetChop C term 3.0 20S 3.0
NetChop Prediction Threshold:
NetMHC Stabpan:
Top Score Metric: Median Score Lowest Score
Binding Threshold:
Allele Specific Binding Thresholds:
Minimum Fold Change:
Expression Value:
Normal Coverage Cutoff:
Tumor DNA Coverage Cutoff:
Tumor RNA Coverage Cutoff:
Normal VAF Cutoff:
Tumor DNA VAF Cutoff:
Tumor RNA VAF Cutoff:
FASTA Size:
IEDB Retries:
Downstream Sequence Length:
IEDB Install Directory:
Bypass duplicate process check:
Keep Tmp Files: