seqxrefget

Function

Description

seqxrefget retrieves all cross-referenced data for a sequence entry. A list of hyperlinks to cross-referenced data is written to the screen and to file. The data iteself is written to a specified directory.

Usage

Command line arguments


Input file format

Output file format

The output file (that is written to screen) consists of a simple list of hyperlinks to the data.

The data itself (written to the specified directory) is in whatever format provided by the database, typically HTML.

Data files

The EMBOSS database information file (db.dat) must be installed in the EMBOSS data directory and indexed. This is done automatically for typical installations.

Notes

Cross-references from a sequence entry to other resources are either "explicit" or "implicit" and are typically made from the database cross-reference (DR) line:

The links include:

# Check "Other" links are handlded - remove mention of them otherwise.

References

Warnings

None.

Diagnostic Error Messages

None.

Exit status

It exits with a status of 0.

Known bugs

None.

Author(s)

This application was modified by

History

Target users

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