CGC substrate visualization
CGC substrate plots are generated by the CGC_substrate_plots module. This module generates a series of plots to visualize the distribution of CGCs and their substrates in the genome. The plots include: Here’s a example of the command to run the module:
run_dbcan CGC_substrate_plot -i output_EscheriaColiK12MG1655_fna/substrate.out -b output_EscheriaColiK12MG1655_fna/PUL_blast.out --cgc output_EscheriaColiK12MG1655_fna/cgc_standard_out.tsv --db_dir db --output_dir output_EscheriaColiK12MG1655_fna
run_dbcan CGC_substrate_plot -i output_EscheriaColiK12MG1655_fna/substrate.out -b output_EscheriaColiK12MG1655_fna/PUL_blast.out --cgc output_EscheriaColiK12MG1655_fna/cgc_standard_out.tsv --db_dir db --output_dir output_EscheriaColiK12MG1655_fna