CAZyme Annotation

The purpose of this step is to annotate CAZymes based on the input process results.

Will automatically use the ‘uniInput.faa’ file from the output folder which is generated by input_process (previous step).

Could use “–methods” to choose different combination of tools from “diamond”, “hmm”, and “dbCANsub”.

run_dbcan CAZyme_annotation  --out_dir output_EscheriaColiK12MG1655_fna --db_dir

run_dbcan CAZyme_annotation  --out_dir output_EscheriaColiK12MG1655_faa --db_dir

run_dbcan CAZyme_annotation  --out_dir output_Xylona_heveae_TC161_faa --db_dir

run_dbcan CAZyme_annotation  --out_dir output_Xylhe1_faa --db_dir