Database Installation Command

prepare the conda environment (available at https://github.com/bcb-unl/run_dbcan_new/tree/master/envs):

conda env create -f environment.yml
conda activate run_dbcan_env
  1. We provide command in the run_dbcan script:

run_dbcan database --db_dir db
  1. Users could also download all database files from the dbCAN2 website (http://bcb.unl.edu/dbCAN2/download/Databases/), and then put them into the db directory.

wget -q https://bcb.unl.edu/dbCAN2/download/run_dbCAN_database_total/dbCAN_db.tar.gz -O db.tar.gz
tar -zxvf db.tar.gz
rm db.tar.gz