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4.12. PQR topology parser

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4.13. DESRES Molecular Structure file format topology parser

Classes to read a topology from a DESRES Molecular Structure file format (DMS) coordinate files (as used by the Desmond MD package).

MDAnalysis.topology.DMSParser.parse(filename)[source]

Parse DMS file filename and return the dict structure.

Only reads the list of atoms.

Returns:MDAnalysis internal structure dict, which contains Atom and Bond objects

See also

The structure dict is defined in MDAnalysis.topology.PSFParser.parse().