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7. Natural language processing (NLP)
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7.1. Overview of NLP
7.1.1. Standard NLP output columns
7.2. NLP config file
7.2.1. Detail
7.2.2. Parallel processing
7.2.3. Specimen config
7.3. Run the NLP
7.3.1. crate_nlp
7.3.2. Current NLP processors
7.3.3. crate_nlp_multiprocess
7.4. CRATE’s Python regex NLP
7.5. GATE NLP applications
7.5.1. Output columns
7.5.2. KConnect (Bio-YODIE)
7.5.3. KCL pharmacotherapy application
7.5.4. KCL Lewy Body Diagnosis Application
7.5.5. Testing a GATE application manually
7.5.6. crate_nlp_build_gate_java_interface
7.5.7. CrateGatePipeline
7.6. MedEx-UIMA drug NLP
7.6.1. Installation
7.6.2. crate_nlp_build_medex_java_interface
7.6.3. crate_nlp_build_medex_itself
Table Of Contents
Contents:
1. Overview
2. Package elements in brief
3. Reference publications
4. Installation
5. Databases and database drivers
6. Anonymisation
7. Natural language processing (NLP)
7.1. Overview of NLP
7.2. NLP config file
7.3. Run the NLP
7.4. CRATE’s Python regex NLP
7.5. GATE NLP applications
7.6. MedEx-UIMA drug NLP
8. Configuring the CRATE web interface
9. Using the CRATE web interface
10. Ancillary tools
11. Troubleshooting
12. Technical notes
13. Upgrading CRATE
14. Common relevant TCP/IP ports
15. Automatic documentation of source code
16. Change log/history
17. Things to do
18. Abbreviations and glossary
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6.7. Run the anonymiser
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