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7. Natural language processing (NLP)¶

  • 7.1. Overview of NLP
    • 7.1.1. Standard NLP output columns
  • 7.2. NLP config file
    • 7.2.1. Detail
    • 7.2.2. Parallel processing
    • 7.2.3. Specimen config
  • 7.3. Run the NLP
    • 7.3.1. crate_nlp
    • 7.3.2. Current NLP processors
    • 7.3.3. crate_nlp_multiprocess
  • 7.4. CRATE’s Python regex NLP
  • 7.5. GATE NLP applications
    • 7.5.1. Output columns
    • 7.5.2. KConnect (Bio-YODIE)
    • 7.5.3. KCL pharmacotherapy application
    • 7.5.4. KCL Lewy Body Diagnosis Application
    • 7.5.5. Testing a GATE application manually
    • 7.5.6. crate_nlp_build_gate_java_interface
    • 7.5.7. CrateGatePipeline
  • 7.6. MedEx-UIMA drug NLP
    • 7.6.1. Installation
    • 7.6.2. crate_nlp_build_medex_java_interface
    • 7.6.3. crate_nlp_build_medex_itself

Table Of Contents

Contents:

  • 1. Overview
  • 2. Package elements in brief
  • 3. Reference publications
  • 4. Installation
  • 5. Databases and database drivers
  • 6. Anonymisation
  • 7. Natural language processing (NLP)
    • 7.1. Overview of NLP
    • 7.2. NLP config file
    • 7.3. Run the NLP
    • 7.4. CRATE’s Python regex NLP
    • 7.5. GATE NLP applications
    • 7.6. MedEx-UIMA drug NLP
  • 8. Configuring the CRATE web interface
  • 9. Using the CRATE web interface
  • 10. Ancillary tools
  • 11. Troubleshooting
  • 12. Technical notes
  • 13. Upgrading CRATE
  • 14. Common relevant TCP/IP ports
  • 15. Automatic documentation of source code
  • 16. Change log/history
  • 17. Things to do
  • 18. Abbreviations and glossary

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