variantMTB Individual Report
General
Tier: TIER_ASSIGNED
Reference: BUILD
chr: CHROMOSOME | Pos: POSITION | Ref: REF | Alt: ALT
Strand: STRAND
HGVS: HGVS_NOTATION
Variant Name CIViC: VARIANT_CIVIC
Entrez Name: ENTREZ_NAME (Entrez ID: ENTREZ_ID)
Variant Type: VARIANT_TYPE
Gene: CIViC: CIVIC_GENE | CGI: CGI_GENE
GENE_DESCRIPTION
Variant Information
Pathogenicity: SIFT: SIFT_SCORE
PolyPhen2: PolyPhen2_SCORE
Allele Frequency: AF: ALLELE_FREQ
gnomAD: GNOMAD_FREQ
Consequence: CGI: CONSEQUENCE_CGI
CIViC: CONSEQUENCE_CIVIC
Oncogenicity - CGI: ONCOGENICITY_CGI -
Oncogenic Prediction: ONCOGENIC_PREDICTION
ClinVAR Entries: CLINVAR_ENTRIES
Protein Change: PROT_CHANGE
Knowledgebase Annotations
Seen In: CIVIC_CGI_PRESENT (External Annotations CGI:
EXT_ANNOS)
CIViC
Linked Diseases: LINKED_DISEASES
Linked Therapies: LINKED_THERAPIES_CIVIC
Evidence:
Learn more about CIViC Evidence Items
here
EVIDENCE_LIST
Description: CIVIC_SUMMARY
- ASSERTION_DESCRIPTION
- EVIDENCE_DESCRIPTION
Literature: LITERATURE_CIVIC
CGI
Linked Therapies
Here we show those drugs that are linked to the Protein Change of this
variant in the CGI Knowledgebase.
Linked Therapies responsive: LINKED_DRUGS_RESPONSIVE
Linked Therapies resistant: LINKED_DRUGS_RESISTANT