{% macro gt_call(individuals) -%} {% for individual in individuals %} {% endfor %}
Case Sample Genotype (GT) Allele depth (AD) Quality (GQ)
Ref Alt
{{ individual.case_id }} {% if individual.is_affected %} {{ individual.sample_id }} {% else %} {{ individual.sample_id }} {% endif %} {{ individual.genotype }} {{ individual.ref_depth }} {{ individual.alt_depth }} {{ individual.genotype_quality }}
{%- endmacro %} {% macro sv_gt_call(individuals) -%} {% for individual in individuals %} {% endfor %}
Case Sample Genotype (GT) Support (SU)
PE SR
{{ individual.case_id }} {% if individual.is_affected %} {{ individual.sample_id }} {% else %} {{ individual.sample_id }} {% endif %} {{ individual.genotype }} {{ individual.pe_support }} {{ individual.sr_support }}
{%- endmacro %}