ProSHADE  0.7.5.3 (FEB 2021)
Protein Shape Detection
ProSHADE_settings Member List

This is the complete list of members for ProSHADE_settings, including all inherited members.

addExtraSpaceProSHADE_settings
addStructure(std::string structure)ProSHADE_settings
allDetectedCAxesProSHADE_settings
allDetectedDAxesProSHADE_settings
allDetectedIAxesProSHADE_settings
allDetectedOAxesProSHADE_settings
allDetectedTAxesProSHADE_settings
axisErrToleranceProSHADE_settings
axisErrToleranceDefault (defined in ProSHADE_settings)ProSHADE_settings
blurFactorProSHADE_settings
boundsExtraSpaceProSHADE_settings
boundsSimilarityThresholdProSHADE_settings
changeMapResolutionProSHADE_settings
changeMapResolutionTriLinearProSHADE_settings
computeEnergyLevelsDescProSHADE_settings
computeRotationFuncDescProSHADE_settings
computeTraceSigmaDescProSHADE_settings
correlationKernelProSHADE_settings
detectedSymmetryProSHADE_settings
determineAllSHValues(proshade_unsign xDim, proshade_unsign yDim, proshade_unsign zDim)ProSHADE_settings
determineBandwidth(proshade_unsign circumference)ProSHADE_settings
determineBandwidthFromAngle(proshade_double uncertainty)ProSHADE_settings
determineIntegrationOrder(proshade_single maxMapRange)ProSHADE_settings
determineSphereDistances(proshade_single maxMapRange)ProSHADE_settings
enLevMatrixPowerWeightProSHADE_settings
firstModelOnlyProSHADE_settings
forceBoundsProSHADE_settings
forceP1ProSHADE_settings
getCommandLineParams(int argc, char **argv)ProSHADE_settings
halfMapKernelProSHADE_settings
inputFilesProSHADE_settings
integOrderProSHADE_settings
invertMapProSHADE_settings
maskFileNameProSHADE_settings
maskingThresholdIQRsProSHADE_settings
maskMapProSHADE_settings
maxBandwidthProSHADE_settings
maxSphereDistsProSHADE_settings
maxSymmetryFoldProSHADE_settings
minSymPeakProSHADE_settings
moveToCOMProSHADE_settings
noIQRsFromMedianNaivePeakProSHADE_settings
normaliseMapProSHADE_settings
outNameProSHADE_settings
overlayStructureNameProSHADE_settings
pdbBFactorNewValProSHADE_settings
peakNeighboursProSHADE_settings
printSettings(void)ProSHADE_settings
progressiveSphereMappingProSHADE_settings
ProSHADE_settings(void)ProSHADE_settings
ProSHADE_settings(ProSHADE_Task task)ProSHADE_settings
reBoxMapProSHADE_settings
recommendedSymmetryFoldProSHADE_settings
recommendedSymmetryTypeProSHADE_settings
removeWatersProSHADE_settings
requestedResolutionProSHADE_settings
requestedSymmetryFoldProSHADE_settings
requestedSymmetryTypeProSHADE_settings
rotationUncertaintyProSHADE_settings
rotTrsJSONFileProSHADE_settings
saveMaskProSHADE_settings
setAxisComparisonThreshold(proshade_double axThres)ProSHADE_settings
setAxisComparisonThresholdBehaviour(bool behav)ProSHADE_settings
setBandwidth(proshade_unsign band)ProSHADE_settings
setBicubicInterpolationSearch(bool bicubPeaks)ProSHADE_settings
setBoundsSpace(proshade_single boundsExSp)ProSHADE_settings
setBoundsThreshold(proshade_signed boundsThres)ProSHADE_settings
setCorrelationMasking(bool corMask)ProSHADE_settings
setDetectedSymmetry(proshade_double *sym)ProSHADE_settings
setEnergyLevelsComputation(bool enLevDesc)ProSHADE_settings
setEnLevShellWeight(proshade_double mPower)ProSHADE_settings
setExtraSpace(proshade_single exSpace)ProSHADE_settings
setGroupingSmoothingFactor(proshade_double smFact)ProSHADE_settings
setIntegrationOrder(proshade_unsign intOrd)ProSHADE_settings
setMapCentering(bool com)ProSHADE_settings
setMapInversion(bool mInv)ProSHADE_settings
setMapReboxing(bool reBx)ProSHADE_settings
setMapResolutionChange(bool mrChange)ProSHADE_settings
setMapResolutionChangeTriLinear(bool mrChange)ProSHADE_settings
setMaskBlurFactor(proshade_single blurFac)ProSHADE_settings
setMaskFilename(std::string mskFln)ProSHADE_settings
setMasking(bool mask)ProSHADE_settings
setMaskIQR(proshade_single noIQRs)ProSHADE_settings
setMaskSaving(bool savMsk)ProSHADE_settings
setMaxSymmetryFold(proshade_unsign maxFold)ProSHADE_settings
setMinimumMaskSize(proshade_single minMS)ProSHADE_settings
setMinimumPeakForAxis(proshade_double minSP)ProSHADE_settings
setMissingPeakThreshold(proshade_double mpThres)ProSHADE_settings
setNormalisation(bool normalise)ProSHADE_settings
setOutputFilename(std::string oFileName)ProSHADE_settings
setOverlayJsonFile(std::string filename)ProSHADE_settings
setOverlaySaveFile(std::string filename)ProSHADE_settings
setPDBBFactor(proshade_double newBF)ProSHADE_settings
setPeakNaiveNoIQR(proshade_double noIQRs)ProSHADE_settings
setPeakNeighboursNumber(proshade_unsign pkS)ProSHADE_settings
setPhaseUsage(bool phaseUsage)ProSHADE_settings
setProgressiveSphereMapping(bool progSphMap)ProSHADE_settings
setRecommendedFold(proshade_unsign val)ProSHADE_settings
setRecommendedSymmetry(std::string val)ProSHADE_settings
setRequestedFold(proshade_unsign val)ProSHADE_settings
setRequestedSymmetry(std::string val)ProSHADE_settings
setResolution(proshade_single resolution)ProSHADE_settings
setRotationFunctionComputation(bool rotfVal)ProSHADE_settings
setSameBoundaries(bool sameB)ProSHADE_settings
setSphereDistances(proshade_single sphDist)ProSHADE_settings
setSymmetryRotFunPeaks(bool rotFunPeaks)ProSHADE_settings
setTaylorSeriesCap(proshade_unsign tayCap)ProSHADE_settings
setTraceSigmaComputation(bool trSigVal)ProSHADE_settings
setTypicalNoiseSize(proshade_single typNoi)ProSHADE_settings
setVariablesLeftOnAuto(void)ProSHADE_settings
setVerbosity(proshade_signed verbosity)ProSHADE_settings
smoothingFactorProSHADE_settings
symMissPeakThresProSHADE_settings
taskProSHADE_settings
taylorSeriesCapProSHADE_settings
useBiCubicInterpolationOnPeaksProSHADE_settings
useCorrelationMaskingProSHADE_settings
usePeakSearchInRotationFunctionSpaceProSHADE_settings
usePhaseProSHADE_settings
useSameBoundsProSHADE_settings
verboseProSHADE_settings
~ProSHADE_settings(void)ProSHADE_settings