ECG R Peak detectors
A collection of ECG heartbeat detection algorithms implemented in Python: https://github.com/berndporr/py-ecg-detectors
Public Member Functions | Public Attributes | List of all members
hrv.HRV Class Reference

Public Member Functions

def __init__ (self, sampling_frequency)
 
def SDNN (self, rr_samples, normalise=False)
 
def SDANN (self, rr_samples, average_period=5.0, normalise=False)
 
def RMSSD (self, rr_samples, normalise=False)
 
def SDSD (self, rr_samples)
 
def NN50 (self, rr_samples)
 
def pNN50 (self, rr_samples)
 
def NN20 (self, rr_samples)
 
def pNN20 (self, rr_samples)
 
def HR (self, rr_samples)
 
def add_rr_error (self, rr_samples, error)
 
def fAnalysis (self, rr_samples)
 

Public Attributes

 fs
 
 period
 
 hr_discrete
 
 t_hr_discrete
 
 hr_func
 
 t_hr_linear
 
 hr_linear
 
 f_hr
 
 f_hr_axis
 
 lf
 
 hf
 

Detailed Description

Heartrate variability class which calcualtes the standard HRV
parameters with the help of Python functions and for cross
validation also via the physionet's get_hrv script.

Constructor & Destructor Documentation

◆ __init__()

def hrv.HRV.__init__ (   self,
  sampling_frequency 
)
Constructor takes the sampling frequency.
All rr_sample data is in sample number and
will assume it's at this sampling rate.

Member Function Documentation

◆ add_rr_error()

def hrv.HRV.add_rr_error (   self,
  rr_samples,
  error 
)
Adds jitter to the heartrate timestamps. 
The error and the rr_samples are in timestamps.
Returns the noisy timestamps in samples.

◆ fAnalysis()

def hrv.HRV.fAnalysis (   self,
  rr_samples 
)
Frequency analysis to calc self.lf, self.hf, returns the LF/HF-ratio and
also calculates the spectrum as pairs of (self.f_hr_axis,self.f_hr).
The input arrary is in sample points where R peaks have been detected.

◆ HR()

def hrv.HRV.HR (   self,
  rr_samples 
)
Calculate heart-rates from R peak samples.

:param rr_samples: R peak sample locations
:type rr_samples: array_like
:return: Heart-rates in BPM
:rtype: ndarray

◆ NN20()

def hrv.HRV.NN20 (   self,
  rr_samples 
)
Calculate NN20, the number of pairs of successive NNs that differ by more than 20 ms.

:param rr_samples: R peak sample locations
:type rr_samples: array_like
:return: NN20
:rtype: float

◆ NN50()

def hrv.HRV.NN50 (   self,
  rr_samples 
)
Calculate NN50, the number of pairs of successive NNs that differ by more than 50 ms.

:param rr_samples: R peak sample locations
:type rr_samples: array_like
:return: NN50
:rtype: float

◆ pNN20()

def hrv.HRV.pNN20 (   self,
  rr_samples 
)
Calculate pNN20, the proportion of NN20 divided by total number of NNs.

:param rr_samples: R peak sample locations
:type rr_samples: array_like
:return: pNN20
:rtype: float

◆ pNN50()

def hrv.HRV.pNN50 (   self,
  rr_samples 
)
Calculate pNN50, the proportion of NN50 divided by total number of NNs.

:param rr_samples: R peak sample locations
:type rr_samples: array_like
:return: pNN50
:rtype: float

◆ RMSSD()

def hrv.HRV.RMSSD (   self,
  rr_samples,
  normalise = False 
)
Calculate RMSSD (root mean square of successive differences).

:param rr_samples: R peak sample locations
:type rr_samples: array_like
:param normalise: normalise the RMSSD against the average RR interval, defaults to False
:type normalise: bool, optional
:return: RMSSD (root mean square of successive differences)
:rtype: float

◆ SDANN()

def hrv.HRV.SDANN (   self,
  rr_samples,
  average_period = 5.0,
  normalise = False 
)
Calculate SDANN, the standard deviation of the average RR intervals calculated over short periods.

:param rr_samples: R peak sample locations
:type rr_samples: array_like
:param average_period: The averging period in minutes, defaults to 5.0
:type average_period: float, optional
:param normalise: normalise the SDANN against the average RR interval, defaults to False
:type normalise: bool, optional
:return: SDANN, the standard deviation of the average RR intervals calculated over short periods
:rtype: float

◆ SDNN()

def hrv.HRV.SDNN (   self,
  rr_samples,
  normalise = False 
)
Calculate SDNN, the standard deviation of NN intervals.

:param rr_samples: R peak sample locations
:type rr_samples: array_like
:param normalise: normalise the SDNN against the average RR interval, defaults to False
:type normalise: bool, optional
:return: SDNN, the standard deviation of NN intervals
:rtype: float

◆ SDSD()

def hrv.HRV.SDSD (   self,
  rr_samples 
)
Calculate SDSD (standard deviation of successive differences), the standard deviation of the successive differences between adjacent NNs.

:param rr_samples: R peak sample locations
:type rr_samples: array_like
:return: SDSD (standard deviation of successive differences)
:rtype: float

The documentation for this class was generated from the following file: