fhirpack.extraction package¶
Submodules¶
fhirpack.extraction.base module¶
- class fhirpack.extraction.base.BaseExtractorMixin[source]¶
Bases:
object
- __dict__ = mappingproxy({'__module__': 'fhirpack.extraction.base', 'getReferences': <function BaseExtractorMixin.getReferences>, 'getResources': <function BaseExtractorMixin.getResources>, 'searchResources': <function BaseExtractorMixin.searchResources>, 'getAbsolutePaths': <function BaseExtractorMixin.getAbsolutePaths>, 'getURLBytes': <function BaseExtractorMixin.getURLBytes>, 'getFromFiles': <function BaseExtractorMixin.getFromFiles>, 'getDICOMInstances': <function BaseExtractorMixin.getDICOMInstances>, '__dict__': <attribute '__dict__' of 'BaseExtractorMixin' objects>, '__weakref__': <attribute '__weakref__' of 'BaseExtractorMixin' objects>, '__doc__': None, '__annotations__': {}})¶
- __doc__ = None¶
- __module__ = 'fhirpack.extraction.base'¶
- __weakref__¶
list of weak references to the object (if defined)
- getAbsolutePaths(paths: list[str], input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None)[source]¶
- getDICOMInstances(input: Optional[list[str]] = None, operateOnCol: str = 'data', resultInCol: Optional[str] = None, params: Optional[dict] = None, inPlace: dict = False)[source]¶
- getFromFiles(input: list[str])[source]¶
Creates a Frame object from json files containing fhir resources
- getReferences(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, params: Optional[dict] = None, ignoreFrame: bool = False, raw: bool = False)[source]¶
- getResources(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None, resourceType: Optional[str] = None, ignoreFrame: bool = False, raw: bool = False)[source]¶
fhirpack.extraction.base_test module¶
fhirpack.extraction.condition module¶
- class fhirpack.extraction.condition.ExtractorConditionMixin[source]¶
Bases:
BaseExtractorMixin
- __doc__ = None¶
- __module__ = 'fhirpack.extraction.condition'¶
fhirpack.extraction.condition_test module¶
fhirpack.extraction.diagnosticreport module¶
- class fhirpack.extraction.diagnosticreport.ExtractorDiagnosticReportMixin[source]¶
Bases:
BaseExtractorMixin
- __doc__ = None¶
- __module__ = 'fhirpack.extraction.diagnosticreport'¶
fhirpack.extraction.endpoint module¶
- class fhirpack.extraction.endpoint.ExtractorEndpointMixin[source]¶
Bases:
BaseExtractorMixin
- __doc__ = None¶
- __module__ = 'fhirpack.extraction.endpoint'¶
fhirpack.extraction.episodeofcare module¶
- class fhirpack.extraction.episodeofcare.ExtractorEpisodeOfCareMixin[source]¶
Bases:
BaseExtractorMixin
- __doc__ = None¶
- __module__ = 'fhirpack.extraction.episodeofcare'¶
fhirpack.extraction.familymemberhistory module¶
- class fhirpack.extraction.familymemberhistory.ExtractorFamilyMemberHistoryMixin[source]¶
Bases:
BaseExtractorMixin
- __doc__ = None¶
- __module__ = 'fhirpack.extraction.familymemberhistory'¶
fhirpack.extraction.imagingstudy module¶
- class fhirpack.extraction.imagingstudy.ExtractorImagingStudyMixin[source]¶
Bases:
BaseExtractorMixin
- __doc__ = None¶
- __module__ = 'fhirpack.extraction.imagingstudy'¶
fhirpack.extraction.list module¶
- class fhirpack.extraction.list.ExtractorListMixin[source]¶
Bases:
BaseExtractorMixin
- __doc__ = None¶
- __module__ = 'fhirpack.extraction.list'¶
fhirpack.extraction.medicationadministration module¶
- class fhirpack.extraction.medicationadministration.ExtractorMedicationAdministrationMixin[source]¶
Bases:
BaseExtractorMixin
- __doc__ = None¶
- __module__ = 'fhirpack.extraction.medicationadministration'¶
fhirpack.extraction.medicationrequest module¶
- class fhirpack.extraction.medicationrequest.ExtractorMedicationRequestMixin[source]¶
Bases:
BaseExtractorMixin
- __doc__ = None¶
- __module__ = 'fhirpack.extraction.medicationrequest'¶
fhirpack.extraction.observation module¶
- class fhirpack.extraction.observation.ExtractorObservationMixin[source]¶
Bases:
BaseExtractorMixin
- __doc__ = None¶
- __module__ = 'fhirpack.extraction.observation'¶
fhirpack.extraction.patient module¶
- class fhirpack.extraction.patient.ExtractorPatientMixin[source]¶
Bases:
BaseExtractorMixin
- __doc__ = None¶
- __module__ = 'fhirpack.extraction.patient'¶
- getLinkedPatients(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None, ignoreFrame: bool = False)[source]¶
fhirpack.extraction.patient_test module¶
fhirpack.extraction.sample module¶
- class fhirpack.extraction.sample.BaseExtractorMixin[source]¶
Bases:
object
- __dict__ = mappingproxy({'__module__': 'fhirpack.extraction.sample', 'getSampleExtractionMethod': <function BaseExtractorMixin.getSampleExtractionMethod>, '__dict__': <attribute '__dict__' of 'BaseExtractorMixin' objects>, '__weakref__': <attribute '__weakref__' of 'BaseExtractorMixin' objects>, '__doc__': None, '__annotations__': {}})¶
- __doc__ = None¶
- __module__ = 'fhirpack.extraction.sample'¶
- __weakref__¶
list of weak references to the object (if defined)
Module contents¶
- class fhirpack.extraction.ExtractorMixin[source]¶
Bases:
ExtractorObservationMixin
,ExtractorPatientMixin
,ExtractorConditionMixin
,ExtractorDiagnosticReportMixin
,ExtractorEpisodeOfCareMixin
,ExtractorFamilyMemberHistoryMixin
,ExtractorMedicationRequestMixin
,ExtractorMedicationAdministrationMixin
,ExtractorListMixin
,ExtractorImagingStudyMixin
,ExtractorEndpointMixin
- __doc__ = None¶
- __module__ = 'fhirpack.extraction'¶