Phybers
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Variables | |
pathname = os.path.dirname(__file__) | |
Variable that saves the absolute path of the file, so the executable /main can be run. More... | |
npoints = sys.argv[1] | |
Number of points at which the segmentation is done. More... | |
fibrasdir = sys.argv[2] | |
Path to the .bundles file that corresponds to the fascicles. More... | |
idsubj = sys.argv[3] | |
ID of the subject that the fascicles belong to. More... | |
atlasdir = sys.argv[4] | |
Path to the folder that contains the .bundles and .bundlesdata files of the atlas. More... | |
atlasInformation = sys.argv[5] | |
Path to the .txt file that contains the atlas' information. More... | |
result_path = sys.argv[6] | |
Output directory path for the segmented fascicles of the subject. More... | |
The segmentation code is ran like this:
python3 -m segmentation <npoints> <fibrasdir> <idsubj> <atlasdir> <atlasInformation> <result_path>
segmentation.main.atlasdir = sys.argv[4] |
Path to the folder that contains the .bundles and .bundlesdata files of the atlas.
Ruta al directorio que contiene los archivos .bundles y .bundlesdata del atlas.
segmentation.main.atlasInformation = sys.argv[5] |
Path to the .txt file that contains the atlas' information.
Ruta al archivo .txt que contiene la información del atlas.
segmentation.main.fibrasdir = sys.argv[2] |
Path to the .bundles file that corresponds to the fascicles.
Ruta al archivo .bundles que corresponde a los fascículos.
segmentation.main.idsubj = sys.argv[3] |
ID of the subject that the fascicles belong to.
ID del sujeto a quien pertenecen los fascículos.
segmentation.main.npoints = sys.argv[1] |
Number of points at which the segmentation is done.
Es el número de puntos a los que se hace la segmentación.
segmentation.main.pathname = os.path.dirname(__file__) |
Variable that saves the absolute path of the file, so the executable /main can be run.
It is not entered by the user. Variable que guarda la ruta absoluta del archivo, para poder correr el ejecutable /main. No es ingresado por el usuario.
segmentation.main.result_path = sys.argv[6] |
Output directory path for the segmented fascicles of the subject.
Directorio de salida para los fascículos segmentados del sujeto.