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  • Welcome to optimModels’s documentation!
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    • Contents:
  • Indices and tables

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Welcome to optimModels’s documentation!¶

This document is in development!

Author¶

Sara Correia (scorreia@deb.uminho.pt)

Centre of Biological Engeneering - University of Minho

Contents:¶

  • Installation
  • Getting started
    • Default Configurations
    • Loading kinetic models
    • Loading community models or stoichiometric models
    • Loading GECKO models
  • Phenotype Simulation
    • Stoichiometric Simulation
    • GECKO Simulation
    • Kinetic Simulation
      • Wild-type simulation
      • Simulation with diferent parameters
      • Knockouts simulation
      • Under/Over expression simulation
  • Strain optimization
    • Kinetic models optimization
      • Evaluation Function
      • Knockouts
      • Under/Over expression
  • optimModels
    • optimModels package
      • Subpackages
        • optimModels.model package
        • optimModels.optimization package
        • optimModels.simulation package
        • optimModels.unittests package
        • optimModels.utils package
      • Module contents

Indices and tables¶

  • Index
  • Module Index
  • Search Page

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© Copyright 2017, Sara Correia. Created using Sphinx 1.7.6.