{% extends "layout.html" %} {% from "macros.html" import igv_open_file %} {% block title %}Statistics{% endblock %} {% block body %} {% for s in samples %} {% endfor %}
Sample Disease Examined Reads
(in reads × 106)
Duplication Rate Unmapped Reads
(in reads × 106)
Coverage Cov > 1 Cov > 5 Cov > 10 Cov > 20 Cov > 50 Cov > 100
{{ igv_open_file('bam' + "/" + s.basename + '.bam', s.basename) }} {{ s.disease }} {{ ((s.examined_pairs() * 2)/1000000)|round(1) }} {{ s.duplication_rate()|round(2) }} {{ (s.unmapped_reads()/1000000)|round(1) }} {{ (s.capturekit_coverage)|round(2) }} {{ (s.capturekit_coverage_greater(1)) | round(3) }} {{ (s.capturekit_coverage_greater(5)) | round(3) }} {{ (s.capturekit_coverage_greater(10)) | round(3) }} {{ (s.capturekit_coverage_greater(20)) | round(3) }} {{ (s.capturekit_coverage_greater(50)) | round(3) }} {{ (s.capturekit_coverage_greater(100)) | round(3) }}
{% endblock %}