>

Model : diauxic_update

Creator
Matthias, Koenig, Humboldt University Berlin, konigmatt@googlemail.com
Created: 2017-03-17 21:17
Modified: 2017-03-17 21:17

SBML model


iddiauxic_update
nameODE metabolite update
versionL3V1
timeh
substancemmol
extentmmol
volumel
aream2
lengthm
UnitDefinitions [12] name units sbo cvterm
h 3600 s
g g
m m
m2 m 2
l litre
mmol 10 3 mole
per_h 1 3600 s
mmol_per_h 10 3 mole 3600 s
mmol_per_l 10 3 mole litre
l_per_mmol litre 10 3 mole
g_per_l g litre
g_per_mmol g 10 3 mole

Compartments [1] name size constant spatial dimensions unit derived unit sbo cvterm
bioreactor bioreactor 1.0 3 l litre

Species [4] name compartment boundary condition constant initial amount initial concentration substance units derived units sbo cvterm
Glcxt glucose
bioreactor 10.8 mmol 10 3 mole litre
Ac acetate
bioreactor 0.4 mmol 10 3 mole litre
O2 oxygen
bioreactor 0.21 mmol 10 3 mole litre
X biomass
bioreactor 0.001 mmol 10 3 mole litre

Parameters [4] name value unit derived unit constant sbo cvterm
EX_Ac Ac exchange (FBA flux) 1.0 mmol_per_h 10 3 mole 3600 s
EX_Glcxt Glcxt exchange (FBA flux) 1.0 mmol_per_h 10 3 mole 3600 s
EX_O2 O2 exchange (FBA flux) 1.0 mmol_per_h 10 3 mole 3600 s
EX_X X exchange (FBA flux) 1.0 mmol_per_h 10 3 mole 3600 s

Reactions [4] name equation modifiers formula derived units sbo cvterm
update_Glcxt Glcxt ⇆ X
EX_Glcxt X 1 0.001 mole 3600 s
update_Ac Ac ⇆ X
EX_Ac X 1 0.001 mole 3600 s
update_O2 O2 ⇆ X
EX_O2 X 1 0.001 mole 3600 s
update_X X ⇆ X
EX_X X 1 0.001 mole 3600 s