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Model : toy_bounds

Creator
Matthias, Koenig, Humboldt University Berlin, konigmatt@googlemail.com
Created: 2017-03-17 16:49
Modified: 2017-03-17 16:49

SBML model


idtoy_bounds
nametoy (BOUNDS submodel)
versionL3V1
times
substanceitem
extentitem
volumem3
aream2
lengthm
FunctionDefinitions [2] name math sbo cvterm
max minimum of arguments x y x x y y
min maximum of arguments x y x x y y

UnitDefinitions [9] name units sbo cvterm
s s
kg kg
m m
m2 m 2
m3 m 3
mM mole m 3
per_s 1 s
item_per_s item s
item_per_m3 item m 3

Compartments [1] name size constant spatial dimensions unit derived unit sbo cvterm
extern external compartment 1.0 3 m3 m 3

Species [2] name compartment boundary condition constant initial amount initial concentration substance units derived units sbo cvterm
A A
extern 10.0 item item
C C
extern 0.0 item item

Parameters [8] name value unit derived unit constant sbo cvterm
dt 0.1 s s
lb_default -1000.0 item_per_s item s
ub_EX_A 1000.0 item_per_s item s
lb_EX_A -1000.0 item_per_s item s
ub_EX_C 1000.0 item_per_s item s
lb_EX_C -1000.0 item_per_s item s
ub_R1 1.0 item_per_s item s
k1 k1 -0.2 per_s 1 s

Rules [3]   assignment derived units sbo cvterm
d ub_R1/dt = k1 ub_R1 item s 2
lb_EX_A = max lb_default A dt item s
lb_EX_C = max lb_default C dt item s