Model : diauxic_fba
CreatorMatthias, Koenig, Humboldt University Berlin, konigmatt@googlemail.com
Created: 2017-03-17 21:17
Modified: 2017-03-17 21:17
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type | UnitDefinitions [12] | name | units | sbo | cvterm |
---|---|---|---|---|---|
UnitDefinition | h | ||||
UnitDefinition | g | ||||
UnitDefinition | m | ||||
UnitDefinition | m2 | ||||
UnitDefinition | l | ||||
UnitDefinition | mmol | ||||
UnitDefinition | per_h | ||||
UnitDefinition | mmol_per_h | ||||
UnitDefinition | mmol_per_l | ||||
UnitDefinition | l_per_mmol | ||||
UnitDefinition | g_per_l | ||||
UnitDefinition | g_per_mmol |
type | Compartments [1] | name | size | constant | spatial dimensions | unit | derived unit | sbo | cvterm |
---|---|---|---|---|---|---|---|---|---|
Compartment | bioreactor | bioreactor | 1.0 | T | 3 | l |
type | Species [4] | name | compartment | boundary condition | constant | initial amount | initial concentration | substance units | derived units | sbo | cvterm |
---|---|---|---|---|---|---|---|---|---|---|---|
Species | Glcxt | glucose |
bioreactor | F | F | 10.8 | mmol | ||||
Species | Ac | acetate |
bioreactor | F | F | 0.4 | mmol | ||||
Species | O2 | oxygen |
bioreactor | F | F | 0.21 | mmol | ||||
Species | X | biomass |
bioreactor | F | F | 0.001 | mmol |
type | Parameters [11] | name | value | unit | derived unit | constant | sbo | cvterm |
---|---|---|---|---|---|---|---|---|
Parameter | zero | zero bound | 0.0 | mmol_per_h | T | |||
Parameter | lb_default | default lower bound | -1000.0 | mmol_per_h | T | |||
Parameter | ub_default | default upper bound | 1000.0 | mmol_per_h | T | |||
Parameter | lb_EX_Ac | -1000.0 | mmol_per_h | T | ||||
Parameter | ub_EX_Ac | 1000.0 | mmol_per_h | T | ||||
Parameter | lb_EX_Glcxt | -1000.0 | mmol_per_h | T | ||||
Parameter | ub_EX_Glcxt | 1000.0 | mmol_per_h | T | ||||
Parameter | lb_EX_O2 | -1000.0 | mmol_per_h | T | ||||
Parameter | ub_EX_O2 | 1000.0 | mmol_per_h | T | ||||
Parameter | lb_EX_X | -1000.0 | mmol_per_h | T | ||||
Parameter | ub_EX_X | 1000.0 | mmol_per_h | T |
type | Reactions [8] | name | equation | modifiers | formula | derived units | sbo | cvterm | |
---|---|---|---|---|---|---|---|---|---|
Reaction | EX_O2 | ➞ | O2 ➞ | ||||||
Reaction | EX_Glcxt | ➞ | Glcxt ➞ | ||||||
Reaction | EX_Ac | ⇆ | Ac ⇆ | ||||||
Reaction | EX_X | ➞ | X ➞ | ||||||
Reaction | v1 | v1 (39.43 Ac + 35 O2 -> X) | ➞ | 39.43 Ac + 35.0 O2 ➞ X | |||||
Reaction | v2 | v2 (9.46 Glcxt + 12.92 O2 -> X) | ➞ | 9.46 Glcxt + 12.92 O2 ➞ X | |||||
Reaction | v3 | v3 (9.84 Glcxt + 12.73 O2 -> 1.24 Ac + X) | ➞ | 9.84 Glcxt + 12.73 O2 ➞ X + 1.24 Ac | |||||
Reaction | v4 | v4 (19.23 Glcxt -> 12.12 Ac + X) | ➞ | 19.23 Glcxt ➞ X + 12.12 Ac |