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Model : diauxic_fba

Creator
Matthias, Koenig, Humboldt University Berlin, konigmatt@googlemail.com
Created: 2017-03-17 21:17
Modified: 2017-03-17 21:17

SBML model


iddiauxic_fba
nameFBA submodel (diauxic_fba)
versionL3V1
timeh
substancemmol
extentmmol
volumel
aream2
lengthm
UnitDefinitions [12] name units sbo cvterm
h 3600 s
g g
m m
m2 m 2
l litre
mmol 10 3 mole
per_h 1 3600 s
mmol_per_h 10 3 mole 3600 s
mmol_per_l 10 3 mole litre
l_per_mmol litre 10 3 mole
g_per_l g litre
g_per_mmol g 10 3 mole

Compartments [1] name size constant spatial dimensions unit derived unit sbo cvterm
bioreactor bioreactor 1.0 3 l litre

Species [4] name compartment boundary condition constant initial amount initial concentration substance units derived units sbo cvterm
Glcxt glucose
bioreactor 10.8 mmol 10 3 mole litre
Ac acetate
bioreactor 0.4 mmol 10 3 mole litre
O2 oxygen
bioreactor 0.21 mmol 10 3 mole litre
X biomass
bioreactor 0.001 mmol 10 3 mole litre

Parameters [11] name value unit derived unit constant sbo cvterm
zero zero bound 0.0 mmol_per_h 10 3 mole 3600 s
lb_default default lower bound -1000.0 mmol_per_h 10 3 mole 3600 s
ub_default default upper bound 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_Ac -1000.0 mmol_per_h 10 3 mole 3600 s
ub_EX_Ac 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_Glcxt -1000.0 mmol_per_h 10 3 mole 3600 s
ub_EX_Glcxt 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_O2 -1000.0 mmol_per_h 10 3 mole 3600 s
ub_EX_O2 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_X -1000.0 mmol_per_h 10 3 mole 3600 s
ub_EX_X 1000.0 mmol_per_h 10 3 mole 3600 s

Reactions [8] name equation modifiers formula derived units sbo cvterm
EX_O2 O2 ➞
EX_Glcxt Glcxt ➞
EX_Ac Ac ⇆
EX_X X ➞
v1 v1 (39.43 Ac + 35 O2 -> X) 39.43 Ac + 35.0 O2 ➞ X
v2 v2 (9.46 Glcxt + 12.92 O2 -> X) 9.46 Glcxt + 12.92 O2 ➞ X
v3 v3 (9.84 Glcxt + 12.73 O2 -> 1.24 Ac + X) 9.84 Glcxt + 12.73 O2 ➞ X + 1.24 Ac
v4 v4 (19.23 Glcxt -> 12.12 Ac + X) 19.23 Glcxt ➞ X + 12.12 Ac