Model : diauxic_top
CreatorMatthias, Koenig, Humboldt University Berlin, konigmatt@googlemail.com
Created: 2017-03-17 21:17
Modified: 2017-03-17 21:17
![]() |
|
type | UnitDefinitions [12] | name | units | sbo | cvterm |
---|---|---|---|---|---|
UnitDefinition | h | ||||
UnitDefinition | g | ||||
UnitDefinition | m | ||||
UnitDefinition | m2 | ||||
UnitDefinition | l | ||||
UnitDefinition | mmol | ||||
UnitDefinition | per_h | ||||
UnitDefinition | mmol_per_h | ||||
UnitDefinition | mmol_per_l | ||||
UnitDefinition | l_per_mmol | ||||
UnitDefinition | g_per_l | ||||
UnitDefinition | g_per_mmol |
type | Compartments [1] | name | size | constant | spatial dimensions | unit | derived unit | sbo | cvterm |
---|---|---|---|---|---|---|---|---|---|
Compartment | bioreactor | bioreactor | 1.0 | T | 3 | l |
type | Species [5] | name | compartment | boundary condition | constant | initial amount | initial concentration | substance units | derived units | sbo | cvterm |
---|---|---|---|---|---|---|---|---|---|---|---|
Species | Glcxt | glucose |
bioreactor | F | F | 10.8 | mmol | ||||
Species | Ac | acetate |
bioreactor | F | F | 0.4 | mmol | ||||
Species | O2 | oxygen |
bioreactor | F | F | 0.21 | mmol | ||||
Species | X | biomass |
bioreactor | F | F | 0.001 | mmol | ||||
Species | dummy_S | dummy_S |
bioreactor | F | F | 0.0 | mmol |
type | Parameters [16] | name | value | unit | derived unit | constant | sbo | cvterm |
---|---|---|---|---|---|---|---|---|
Parameter | dt | fba timestep | 0.01 | h | T | |||
Parameter | Y | biomass [g_per_l] | 1.0 | g_per_l | F | |||
Parameter | O2_ref | O2 reference | 0.21 | mmol_per_l | T | |||
Parameter | kLa | O2 mass transfer | 7.5 | per_h | T | |||
Parameter | EX_Glcxt | 1.0 | mmol_per_h | F | ||||
Parameter | EX_Ac | 1.0 | mmol_per_h | F | ||||
Parameter | EX_O2 | 1.0 | mmol_per_h | F | ||||
Parameter | EX_X | 1.0 | mmol_per_h | F | ||||
Parameter | lb_EX_Ac | -1000.0 | mmol_per_h | F | ||||
Parameter | ub_EX_Ac | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_Glcxt | -1000.0 | mmol_per_h | F | ||||
Parameter | ub_EX_Glcxt | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_O2 | -1000.0 | mmol_per_h | F | ||||
Parameter | ub_EX_O2 | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_X | -1000.0 | mmol_per_h | F | ||||
Parameter | ub_EX_X | 1000.0 | mmol_per_h | F |
type | Rules [5] | assignment | derived units | sbo | cvterm | |
---|---|---|---|---|---|---|
Rule | EX_Glcxt | = | ||||
Rule | EX_Ac | = | ||||
Rule | EX_O2 | = | ||||
Rule | EX_X | = | ||||
Rule | Y | = |
type | Reactions [5] | name | equation | modifiers | formula | derived units | sbo | cvterm | |
---|---|---|---|---|---|---|---|---|---|
Reaction | dummy_EX_Glcxt | EX_Glcxt dummy | ➞ | ➞ dummy_S | |||||
Reaction | dummy_EX_O2 | EX_O2 dummy | ➞ | ➞ dummy_S | |||||
Reaction | dummy_EX_Ac | EX_Ac dummy | ➞ | ➞ dummy_S | |||||
Reaction | dummy_EX_X | EX_X dummy | ➞ | ➞ dummy_S | |||||
Reaction | vO2_transfer | oxygen transfer | ⇆ | ⇆ O2 |