Model : diauxic_update
CreatorMatthias, Koenig, Humboldt University Berlin, konigmatt@googlemail.com
Created: 2017-03-17 21:17
Modified: 2017-03-17 21:17
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type | UnitDefinitions [12] | name | units | sbo | cvterm |
---|---|---|---|---|---|
UnitDefinition | h | ||||
UnitDefinition | g | ||||
UnitDefinition | m | ||||
UnitDefinition | m2 | ||||
UnitDefinition | l | ||||
UnitDefinition | mmol | ||||
UnitDefinition | per_h | ||||
UnitDefinition | mmol_per_h | ||||
UnitDefinition | mmol_per_l | ||||
UnitDefinition | l_per_mmol | ||||
UnitDefinition | g_per_l | ||||
UnitDefinition | g_per_mmol |
type | Compartments [1] | name | size | constant | spatial dimensions | unit | derived unit | sbo | cvterm |
---|---|---|---|---|---|---|---|---|---|
Compartment | bioreactor | bioreactor | 1.0 | T | 3 | l |
type | Species [4] | name | compartment | boundary condition | constant | initial amount | initial concentration | substance units | derived units | sbo | cvterm |
---|---|---|---|---|---|---|---|---|---|---|---|
Species | Glcxt | glucose |
bioreactor | F | F | 10.8 | mmol | ||||
Species | Ac | acetate |
bioreactor | F | F | 0.4 | mmol | ||||
Species | O2 | oxygen |
bioreactor | F | F | 0.21 | mmol | ||||
Species | X | biomass |
bioreactor | F | F | 0.001 | mmol |
type | Parameters [4] | name | value | unit | derived unit | constant | sbo | cvterm |
---|---|---|---|---|---|---|---|---|
Parameter | EX_Ac | Ac exchange (FBA flux) | 1.0 | mmol_per_h | T | |||
Parameter | EX_Glcxt | Glcxt exchange (FBA flux) | 1.0 | mmol_per_h | T | |||
Parameter | EX_O2 | O2 exchange (FBA flux) | 1.0 | mmol_per_h | T | |||
Parameter | EX_X | X exchange (FBA flux) | 1.0 | mmol_per_h | T |
type | Reactions [4] | name | equation | modifiers | formula | derived units | sbo | cvterm | |
---|---|---|---|---|---|---|---|---|---|
Reaction | update_Glcxt | ⇆ | Glcxt ⇆ |
X |
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Reaction | update_Ac | ⇆ | Ac ⇆ |
X |
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Reaction | update_O2 | ⇆ | O2 ⇆ |
X |
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Reaction | update_X | ⇆ | X ⇆ |
X |