Model : diauxic_bounds
CreatorMatthias, Koenig, Humboldt University Berlin, konigmatt@googlemail.com
Created: 2017-03-17 21:17
Modified: 2017-03-17 21:17
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type | FunctionDefinitions [2] | name | math | sbo | cvterm |
---|---|---|---|---|---|
FunctionDefinition | max | minimum of arguments | |||
FunctionDefinition | min | maximum of arguments |
type | UnitDefinitions [12] | name | units | sbo | cvterm |
---|---|---|---|---|---|
UnitDefinition | h | ||||
UnitDefinition | g | ||||
UnitDefinition | m | ||||
UnitDefinition | m2 | ||||
UnitDefinition | l | ||||
UnitDefinition | mmol | ||||
UnitDefinition | per_h | ||||
UnitDefinition | mmol_per_h | ||||
UnitDefinition | mmol_per_l | ||||
UnitDefinition | l_per_mmol | ||||
UnitDefinition | g_per_l | ||||
UnitDefinition | g_per_mmol |
type | Compartments [1] | name | size | constant | spatial dimensions | unit | derived unit | sbo | cvterm |
---|---|---|---|---|---|---|---|---|---|
Compartment | bioreactor | bioreactor | 1.0 | T | 3 | l |
type | Species [4] | name | compartment | boundary condition | constant | initial amount | initial concentration | substance units | derived units | sbo | cvterm |
---|---|---|---|---|---|---|---|---|---|---|---|
Species | Glcxt | glucose |
bioreactor | F | F | 10.8 | mmol | ||||
Species | Ac | acetate |
bioreactor | F | F | 0.4 | mmol | ||||
Species | O2 | oxygen |
bioreactor | F | F | 0.21 | mmol | ||||
Species | X | biomass |
bioreactor | F | F | 0.001 | mmol |
type | Parameters [17] | name | value | unit | derived unit | constant | sbo | cvterm |
---|---|---|---|---|---|---|---|---|
Parameter | dt | fba timestep | 0.01 | h | T | |||
Parameter | zero | zero bound | 0.0 | mmol_per_h | T | |||
Parameter | lb_default | default lower bound | -1000.0 | mmol_per_h | T | |||
Parameter | ub_default | default upper bound | 1000.0 | mmol_per_h | T | |||
Parameter | lb_EX_Ac | -1000.0 | mmol_per_h | F | ||||
Parameter | ub_EX_Ac | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_Glcxt | -1000.0 | mmol_per_h | F | ||||
Parameter | ub_EX_Glcxt | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_O2 | -1000.0 | mmol_per_h | F | ||||
Parameter | ub_EX_O2 | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_X | -1000.0 | mmol_per_h | F | ||||
Parameter | ub_EX_X | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_kin_EX_Glcxt | -1000.0 | mmol_per_h | F | ||||
Parameter | lb_kin_EX_O2 | -1000.0 | mmol_per_h | F | ||||
Parameter | Vmax_EX_O2 | 15.0 | mmol_per_h | T | ||||
Parameter | Vmax_EX_Glcxt | 10.0 | mmol_per_h | T | ||||
Parameter | Km_EX_Glcxt | Km_vGlcxt | 0.015 | mmol_per_l | T |
type | Rules [6] | assignment | derived units | sbo | cvterm | |
---|---|---|---|---|---|---|
Rule | lb_kin_EX_Glcxt | = | ||||
Rule | lb_kin_EX_O2 | = | ||||
Rule | lb_EX_Ac | = | ||||
Rule | lb_EX_Glcxt | = | ||||
Rule | lb_EX_O2 | = | ||||
Rule | lb_EX_X | = |