Wholecell Toy Model

UPDATE submodel

Submodel for dynamically updating the metabolite count. This updates the ode model based on the FBA fluxes.

Description

This is a toy model for coupling models with different modeling frameworks via comp.

This file has been produced by Matthias Koenig.

Terms of use

Copyright © 2017 Matthias Koenig

Redistribution and use of any part of this model, with or without modification, are permitted provided that the following conditions are met:

  1. Redistributions of this SBML file must retain the above copyright notice, this list of conditions and the following disclaimer.
  2. Redistributions in a different form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
This model is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.


Model : toy_update

Creator
Matthias, Koenig, Humboldt University Berlin, konigmatt@googlemail.com
Created: 2017-03-20 00:25
Modified: 2017-03-20 00:25

SBML model


idtoy_update
nametoy (UPDATE submodel)
versionL3V1
times
substanceitem
extentitem
volumem3
aream2
lengthm
UnitDefinitions [9] name units sbo cvterm
s s
kg kg
m m
m2 m 2
m3 m 3
mM mole m 3
per_s 1 s
item_per_s item s
item_per_m3 item m 3

Compartments [1] name size constant spatial dimensions unit derived unit sbo cvterm
extern external compartment 1.0 3 m3 m 3

Species [2] name compartment boundary condition constant initial amount initial concentration substance units derived units sbo cvterm
A A
extern 10.0 item item
C C
extern 0.0 item item

Parameters [2] name value unit derived unit constant sbo cvterm
EX_A 1.0 item_per_s item s
EX_C 1.0 item_per_s item s

Reactions [2] name equation modifiers formula derived units sbo cvterm
update_A A ⇆ EX_A item s
update_C C ⇆ EX_C item s