Wholecell Toy Model
Model version: 7
UPDATE submodel
Submodel for dynamically updating the metabolite count. This updates the ode model based on the FBA fluxes.
Description
This is a toy model for coupling models with different modeling frameworks via comp.
Terms of use
Redistribution and use of any part of this model, with or without modification, are permitted provided that the following conditions are met:
- Redistributions of this SBML file must retain the above copyright notice, this list of conditions and the following disclaimer.
- Redistributions in a different form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
Model : toy_update
CreatorMatthias, Koenig, Humboldt University Berlin, konigmatt@googlemail.com
Created: 2017-04-05 13:28
Modified: 2017-04-05 13:28
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type | UnitDefinitions [9] | name | units | sbo | cvterm |
---|---|---|---|---|---|
UnitDefinition | s | ||||
UnitDefinition | kg | ||||
UnitDefinition | m | ||||
UnitDefinition | m2 | ||||
UnitDefinition | m3 | ||||
UnitDefinition | mM | ||||
UnitDefinition | per_s | ||||
UnitDefinition | item_per_s | ||||
UnitDefinition | item_per_m3 |
type | Compartments [1] | name | size | constant | spatial dimensions | unit | derived unit | sbo | cvterm |
---|---|---|---|---|---|---|---|---|---|
Compartment | extern | extern | 1.0 | T | 3 | m3 |
type | Species [2] | name | compartment | boundary condition | constant | initial amount | initial concentration | substance units | derived units | sbo | cvterm |
---|---|---|---|---|---|---|---|---|---|---|---|
Species | C | C |
extern | F | F | 1.0 | item | ||||
Species | A | A |
extern | F | F | 1.0 | item |
type | Parameters [2] | name | value | unit | derived unit | constant | sbo | cvterm |
---|---|---|---|---|---|---|---|---|
Parameter | EX_C | 1.0 | item_per_s | T | ||||
Parameter | EX_A | 1.0 | item_per_s | T |
type | Reactions [2] | name | equation | modifiers | formula | derived units | sbo | cvterm | |
---|---|---|---|---|---|---|---|---|---|
Reaction | update_C | ⇆ | C ⇆ | ||||||
Reaction | update_A | ⇆ | A ⇆ |