E.coli core DFBA model
Model version: 5
TOP model
Main comp DFBA model by combining fba, update and bounds model with additional kinetics in the top model.
Description
This is a metabolism model of Escherichia coli str. K-12 substr. MG1655 in SBML format.
Terms of use
Redistribution and use of any part of this model from BiGG Models knowledge-base, with or without modification, are permitted provided that the following conditions are met:
- Redistributions of this SBML file must retain the above copyright notice, this list of conditions and the following disclaimer.
- Redistributions in a different form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
For specific licensing terms about this particular model and regulations of commercial use, see this model in BiGG Models knowledge-base.
References
When using content from BiGG Models knowledge-base in your research works, please cite- King ZA, Lu JS, Dräger A, Miller PC, Federowicz S, Lerman JA, Ebrahim A, Palsson BO, and Lewis NE. (2015).
- BiGG Models: A platform for integrating, standardizing, and sharing genome-scale models. Nucl Acids Res. doi:10.1093/nar/gkv1049
Model : ecoli_top_flat
CreatorMatthias, Koenig, Humboldt University Berlin, konigmatt@googlemail.com
Created: 2017-04-03 17:09
Modified: 2017-04-03 17:09
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type | FunctionDefinitions [2] | name | math | sbo | cvterm |
---|---|---|---|---|---|
FunctionDefinition | bounds__max | min | |||
FunctionDefinition | bounds__min | max |
type | UnitDefinitions [13] | name | units | sbo | cvterm |
---|---|---|---|---|---|
UnitDefinition | h | ||||
UnitDefinition | g | ||||
UnitDefinition | m | ||||
UnitDefinition | m2 | ||||
UnitDefinition | l | ||||
UnitDefinition | mmol | ||||
UnitDefinition | per_h | ||||
UnitDefinition | mmol_per_h | ||||
UnitDefinition | mmol_per_l | ||||
UnitDefinition | l_per_mmol | ||||
UnitDefinition | g_per_l | ||||
UnitDefinition | g_per_mmol | ||||
UnitDefinition | fba__mmol_per_gDW_per_hr |
type | Compartments [3] | name | size | constant | spatial dimensions | unit | derived unit | sbo | cvterm |
---|---|---|---|---|---|---|---|---|---|
Compartment | bioreactor | bioreactor | 1.0 | T | 3 | l | |||
Compartment | fba__c | cytosol | T | 0 | l | BQB_IS
c |
|||
Compartment | fba__e | extracellular space | T | 0 | l | BQB_IS
e |
type | Species [93] | name | compartment | boundary condition | constant | initial amount | initial concentration | substance units | derived units | sbo | cvterm |
---|---|---|---|---|---|---|---|---|---|---|---|
Species | pi_e | Phosphate |
bioreactor | F | F | 0.0 | mmol | ||||
Species | for_e | Formate |
bioreactor | F | F | 0.0 | mmol | ||||
Species | h_e | H+ |
bioreactor | F | F | 0.0 | mmol | ||||
Species | o2_e | O2 |
bioreactor | F | F | 0.21 | mmol | ||||
Species | lac__D_e | D-Lactate |
bioreactor | F | F | 0.0 | mmol | ||||
Species | pyr_e | Pyruvate |
bioreactor | F | F | 0.0 | mmol | ||||
Species | etoh_e | Ethanol |
bioreactor | F | F | 0.0 | mmol | ||||
Species | gln__L_e | L-Glutamine |
bioreactor | F | F | 0.0 | mmol | ||||
Species | akg_e | 2-Oxoglutarate |
bioreactor | F | F | 0.0 | mmol | ||||
Species | co2_e | CO2 |
bioreactor | F | F | 0.04 | mmol | ||||
Species | acald_e | Acetaldehyde |
bioreactor | F | F | 0.0 | mmol | ||||
Species | glu__L_e | L-Glutamate |
bioreactor | F | F | 0.0 | mmol | ||||
Species | mal__L_e | L-Malate |
bioreactor | F | F | 0.0 | mmol | ||||
Species | fum_e | Fumarate |
bioreactor | F | F | 0.0 | mmol | ||||
Species | fru_e | D-Fructose |
bioreactor | F | F | 0.0 | mmol | ||||
Species | succ_e | Succinate |
bioreactor | F | F | 1.0 | mmol | ||||
Species | h2o_e | H2O |
bioreactor | F | F | 0.0 | mmol | ||||
Species | nh4_e | Ammonium |
bioreactor | F | F | 0.0 | mmol | ||||
Species | ac_e | Acetate |
bioreactor | F | F | 0.0 | mmol | ||||
Species | glc__D_e | D-Glucose |
bioreactor | F | F | 20.0 | mmol | ||||
Species | dummy_S | dummy_S |
bioreactor | F | F | 0.0 | mmol | ||||
Species | fba__M_13dpg_c | 3-Phospho-D-glyceroyl phosphate C3H4O10P2 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__M_2pg_c | D-Glycerate 2-phosphate C3H4O7P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__M_3pg_c | 3-Phospho-D-glycerate C3H4O7P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__M_6pgc_c | 6-Phospho-D-gluconate C6H10O10P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__M_6pgl_c | 6-phospho-D-glucono-1,5-lactone C6H9O9P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__ac_c | Acetate C2H3O2 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__ac_e | Acetate C2H3O2 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__acald_c | Acetaldehyde C2H4O |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__acald_e | Acetaldehyde C2H4O |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__accoa_c | Acetyl-CoA C23H34N7O17P3S |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__acon_C_c | Cis-Aconitate C6H3O6 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__actp_c | Acetyl phosphate C2H3O5P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__adp_c | ADP C10H12N5O10P2 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__akg_c | 2-Oxoglutarate C5H4O5 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__akg_e | 2-Oxoglutarate C5H4O5 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__amp_c | AMP C10H12N5O7P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__atp_c | ATP C10H12N5O13P3 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__cit_c | Citrate C6H5O7 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__co2_c | CO2 CO2 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__co2_e | CO2 CO2 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__coa_c | Coenzyme A C21H32N7O16P3S |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__dhap_c | Dihydroxyacetone phosphate C3H5O6P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__e4p_c | D-Erythrose 4-phosphate C4H7O7P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__etoh_c | Ethanol C2H6O |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__etoh_e | Ethanol C2H6O |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__f6p_c | D-Fructose 6-phosphate C6H11O9P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__fdp_c | D-Fructose 1,6-bisphosphate C6H10O12P2 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__for_c | Formate CH1O2 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__for_e | Formate CH1O2 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__fru_e | D-Fructose C6H12O6 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__fum_c | Fumarate C4H2O4 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__fum_e | Fumarate C4H2O4 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__g3p_c | Glyceraldehyde 3-phosphate C3H5O6P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__g6p_c | D-Glucose 6-phosphate C6H11O9P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__glc__D_e | D-Glucose C6H12O6 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__gln__L_c | L-Glutamine C5H10N2O3 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__gln__L_e | L-Glutamine C5H10N2O3 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__glu__L_c | L-Glutamate C5H8NO4 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__glu__L_e | L-Glutamate C5H8NO4 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__glx_c | Glyoxylate C2H1O3 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__h2o_c | H2O H2O |
fba__c | F | F | 0.0 | mmol | BQB_IS
h2o 312945185 cpd00001 cpd15275 MNXM2 C00001 C01328 D00001 D03703 D06322 HMDB01039 HMDB02111 CHEBI:10743 CHEBI:13352 CHEBI:13365 CHEBI:13419 CHEBI:15377 CHEBI:16234 CHEBI:27313 CHEBI:29356 CHEBI:29375 CHEBI:29412 CHEBI:30490 CHEBI:33813 CHEBI:42043 CHEBI:42857 CHEBI:43228 CHEBI:44292 CHEBI:44641 CHEBI:44701 CHEBI:44819 CHEBI:5585 CHEBI:5594 UPC00001 UPC01328 META:CPD-15815 META:HYDROXYL-GROUP META:OH META:OXONIUM META:WATER MNXR68303 |
|||
Species | fba__h2o_e | H2O H2O |
fba__e | F | F | 0.0 | mmol | BQB_IS
h2o 312945185 cpd00001 cpd15275 MNXM2 C00001 C01328 D00001 D03703 D06322 HMDB01039 HMDB02111 CHEBI:10743 CHEBI:13352 CHEBI:13365 CHEBI:13419 CHEBI:15377 CHEBI:16234 CHEBI:27313 CHEBI:29356 CHEBI:29375 CHEBI:29412 CHEBI:30490 CHEBI:33813 CHEBI:42043 CHEBI:42857 CHEBI:43228 CHEBI:44292 CHEBI:44641 CHEBI:44701 CHEBI:44819 CHEBI:5585 CHEBI:5594 UPC00001 UPC01328 META:CPD-15815 META:HYDROXYL-GROUP META:OH META:OXONIUM META:WATER MNXR68303 |
|||
Species | fba__h_c | H+ H |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__h_e | H+ H |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__icit_c | Isocitrate C6H5O7 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__lac__D_c | D-Lactate C3H5O3 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__lac__D_e | D-Lactate C3H5O3 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__mal__L_c | L-Malate C4H4O5 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__mal__L_e | L-Malate C4H4O5 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__nad_c | Nicotinamide adenine dinucleotide C21H26N7O14P2 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__nadh_c | Nicotinamide adenine dinucleotide - reduced C21H27N7O14P2 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__nadp_c | Nicotinamide adenine dinucleotide phosphate C21H25N7O17P3 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__nadph_c | Nicotinamide adenine dinucleotide phosphate - reduced C21H26N7O17P3 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__nh4_c | Ammonium H4N |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__nh4_e | Ammonium H4N |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__o2_c | O2 O2 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__o2_e | O2 O2 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__oaa_c | Oxaloacetate C4H2O5 |
fba__c | F | F | 0.0 | mmol | BQB_IS
oaa 312945340 cpd00032 cpd02469 MNXM46 C00036 C03981 HMDB00223 LMFA01170061 LMFA01170120 CHEBI:10547 CHEBI:1158 CHEBI:12810 CHEBI:12820 CHEBI:14703 CHEBI:16452 CHEBI:17479 CHEBI:19638 CHEBI:23910 CHEBI:23911 CHEBI:24958 CHEBI:24959 CHEBI:25731 CHEBI:25734 CHEBI:28394 CHEBI:29049 CHEBI:30744 CHEBI:30798 CHEBI:7812 UPC00036 META:ASPARTATE--TRNA-LIGASE-RXN META:ENOL-OXALOACETATE META:OXALACETIC_ACID c1475 MNXR81772 6.1.1.23 R05577 |
|||
Species | fba__pep_c | Phosphoenolpyruvate C3H2O6P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__pi_c | Phosphate HO4P |
fba__c | F | F | 0.0 | mmol | BQB_IS
pi 312945413 cpd00009 MNXM9 C00009 D05467 HMDB00973 HMDB01429 HMDB02105 HMDB02142 HMDB05947 CHEBI:14791 CHEBI:18367 CHEBI:26020 CHEBI:26078 CHEBI:29137 CHEBI:29139 CHEBI:32958 CHEBI:39739 CHEBI:39745 CHEBI:43470 CHEBI:43474 CHEBI:45024 CHEBI:68546 CHEBI:68835 CHEBI:74873 CHEBI:7793 UPC00009 META:CHORISMATEMUT-RXN META:CPD-16459 META:PHOSPHATE-GROUP META:Pi c0693 MNXR1159 5.4.99.5 R01715 13897 13898 13899 13900 UCR01715 UER00203 |
|||
Species | fba__pi_e | Phosphate HO4P |
fba__e | F | F | 0.0 | mmol | BQB_IS
pi 312945413 cpd00009 MNXM9 C00009 D05467 HMDB00973 HMDB01429 HMDB02105 HMDB02142 HMDB05947 CHEBI:14791 CHEBI:18367 CHEBI:26020 CHEBI:26078 CHEBI:29137 CHEBI:29139 CHEBI:32958 CHEBI:39739 CHEBI:39745 CHEBI:43470 CHEBI:43474 CHEBI:45024 CHEBI:68546 CHEBI:68835 CHEBI:74873 CHEBI:7793 UPC00009 META:CHORISMATEMUT-RXN META:CPD-16459 META:PHOSPHATE-GROUP META:Pi c0693 MNXR1159 5.4.99.5 R01715 13897 13898 13899 13900 UCR01715 UER00203 |
|||
Species | fba__pyr_c | Pyruvate C3H3O3 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__pyr_e | Pyruvate C3H3O3 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__q8_c | Ubiquinone-8 C49H74O4 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__q8h2_c | Ubiquinol-8 C49H76O4 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__r5p_c | Alpha-D-Ribose 5-phosphate C5H9O8P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__ru5p__D_c | D-Ribulose 5-phosphate C5H9O8P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__s7p_c | Sedoheptulose 7-phosphate C7H13O10P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__succ_c | Succinate C4H4O4 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__succ_e | Succinate C4H4O4 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__succoa_c | Succinyl-CoA C25H35N7O19P3S |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__xu5p__D_c | D-Xylulose 5-phosphate C5H9O8P |
fba__c | F | F | 0.0 | mmol |
type | Parameters [86] | name | value | unit | derived unit | constant | sbo | cvterm |
---|---|---|---|---|---|---|---|---|
Parameter | dt | 0.1 | h | T | ||||
Parameter | lb_EX_pi_e | -1000.0 | mmol_per_h | F | ||||
Parameter | ub_EX_pi_e | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_for_e | 0.0 | mmol_per_h | F | ||||
Parameter | ub_EX_for_e | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_h_e | -1000.0 | mmol_per_h | F | ||||
Parameter | ub_EX_h_e | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_o2_e | -1000.0 | mmol_per_h | F | ||||
Parameter | ub_EX_o2_e | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_lac__D_e | 0.0 | mmol_per_h | F | ||||
Parameter | ub_EX_lac__D_e | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_pyr_e | 0.0 | mmol_per_h | F | ||||
Parameter | ub_EX_pyr_e | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_etoh_e | 0.0 | mmol_per_h | F | ||||
Parameter | ub_EX_etoh_e | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_gln__L_e | 0.0 | mmol_per_h | F | ||||
Parameter | ub_EX_gln__L_e | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_akg_e | 0.0 | mmol_per_h | F | ||||
Parameter | ub_EX_akg_e | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_co2_e | -1000.0 | mmol_per_h | F | ||||
Parameter | ub_EX_co2_e | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_acald_e | 0.0 | mmol_per_h | F | ||||
Parameter | ub_EX_acald_e | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_glu__L_e | 0.0 | mmol_per_h | F | ||||
Parameter | ub_EX_glu__L_e | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_mal__L_e | 0.0 | mmol_per_h | F | ||||
Parameter | ub_EX_mal__L_e | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_fum_e | 0.0 | mmol_per_h | F | ||||
Parameter | ub_EX_fum_e | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_fru_e | 0.0 | mmol_per_h | F | ||||
Parameter | ub_EX_fru_e | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_succ_e | 0.0 | mmol_per_h | F | ||||
Parameter | ub_EX_succ_e | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_h2o_e | -1000.0 | mmol_per_h | F | ||||
Parameter | ub_EX_h2o_e | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_nh4_e | -1000.0 | mmol_per_h | F | ||||
Parameter | ub_EX_nh4_e | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_ac_e | 0.0 | mmol_per_h | F | ||||
Parameter | ub_EX_ac_e | 1000.0 | mmol_per_h | F | ||||
Parameter | lb_EX_glc__D_e | -10.0 | mmol_per_h | F | ||||
Parameter | ub_EX_glc__D_e | 1000.0 | mmol_per_h | F | ||||
Parameter | EX_pi_e | 1.0 | mmol_per_h | F | ||||
Parameter | EX_for_e | 1.0 | mmol_per_h | F | ||||
Parameter | EX_h_e | 1.0 | mmol_per_h | F | ||||
Parameter | EX_o2_e | 1.0 | mmol_per_h | F | ||||
Parameter | EX_lac__D_e | 1.0 | mmol_per_h | F | ||||
Parameter | EX_pyr_e | 1.0 | mmol_per_h | F | ||||
Parameter | EX_etoh_e | 1.0 | mmol_per_h | F | ||||
Parameter | EX_gln__L_e | 1.0 | mmol_per_h | F | ||||
Parameter | EX_akg_e | 1.0 | mmol_per_h | F | ||||
Parameter | EX_co2_e | 1.0 | mmol_per_h | F | ||||
Parameter | EX_acald_e | 1.0 | mmol_per_h | F | ||||
Parameter | EX_glu__L_e | 1.0 | mmol_per_h | F | ||||
Parameter | EX_mal__L_e | 1.0 | mmol_per_h | F | ||||
Parameter | EX_fum_e | 1.0 | mmol_per_h | F | ||||
Parameter | EX_fru_e | 1.0 | mmol_per_h | F | ||||
Parameter | EX_succ_e | 1.0 | mmol_per_h | F | ||||
Parameter | EX_h2o_e | 1.0 | mmol_per_h | F | ||||
Parameter | EX_nh4_e | 1.0 | mmol_per_h | F | ||||
Parameter | EX_ac_e | 1.0 | mmol_per_h | F | ||||
Parameter | EX_glc__D_e | 1.0 | mmol_per_h | F | ||||
Parameter | fba__cobra_default_lb | cobra default - lb | -1000.0 | fba__mmol_per_gDW_per_hr | T | |||
Parameter | fba__cobra_default_ub | cobra default - ub | 1000.0 | fba__mmol_per_gDW_per_hr | T | |||
Parameter | fba__cobra_0_bound | cobra 0 - bound | 0.0 | fba__mmol_per_gDW_per_hr | T | |||
Parameter | fba__R_ATPM_lower_bound | R ATPM lower - bound | 0.0 | fba__mmol_per_gDW_per_hr | T | |||
Parameter | fba__R_EX_glc__D_e_lower_bound | R EX glc-D e lower - bound | -10.0 | fba__mmol_per_gDW_per_hr | T | |||
Parameter | bounds__fbalb_EX_pi_e | -1000.0 | mmol_per_h | F | ||||
Parameter | bounds__fbalb_EX_for_e | 0.0 | mmol_per_h | F | ||||
Parameter | bounds__fbalb_EX_h_e | -1000.0 | mmol_per_h | F | ||||
Parameter | bounds__fbalb_EX_o2_e | -1000.0 | mmol_per_h | F | ||||
Parameter | bounds__fbalb_EX_lac__D_e | 0.0 | mmol_per_h | F | ||||
Parameter | bounds__fbalb_EX_pyr_e | 0.0 | mmol_per_h | F | ||||
Parameter | bounds__fbalb_EX_etoh_e | 0.0 | mmol_per_h | F | ||||
Parameter | bounds__fbalb_EX_gln__L_e | 0.0 | mmol_per_h | F | ||||
Parameter | bounds__fbalb_EX_akg_e | 0.0 | mmol_per_h | F | ||||
Parameter | bounds__fbalb_EX_co2_e | -1000.0 | mmol_per_h | F | ||||
Parameter | bounds__fbalb_EX_acald_e | 0.0 | mmol_per_h | F | ||||
Parameter | bounds__fbalb_EX_glu__L_e | 0.0 | mmol_per_h | F | ||||
Parameter | bounds__fbalb_EX_mal__L_e | 0.0 | mmol_per_h | F | ||||
Parameter | bounds__fbalb_EX_fum_e | 0.0 | mmol_per_h | F | ||||
Parameter | bounds__fbalb_EX_fru_e | 0.0 | mmol_per_h | F | ||||
Parameter | bounds__fbalb_EX_succ_e | 0.0 | mmol_per_h | F | ||||
Parameter | bounds__fbalb_EX_h2o_e | -1000.0 | mmol_per_h | F | ||||
Parameter | bounds__fbalb_EX_nh4_e | -1000.0 | mmol_per_h | F | ||||
Parameter | bounds__fbalb_EX_ac_e | 0.0 | mmol_per_h | F | ||||
Parameter | bounds__fbalb_EX_glc__D_e | -10.0 | mmol_per_h | F |
type | Rules [40] | assignment | derived units | sbo | cvterm | |
---|---|---|---|---|---|---|
Rule | EX_pi_e | = | ||||
Rule | EX_for_e | = | ||||
Rule | EX_h_e | = | ||||
Rule | EX_o2_e | = | ||||
Rule | EX_lac__D_e | = | ||||
Rule | EX_pyr_e | = | ||||
Rule | EX_etoh_e | = | ||||
Rule | EX_gln__L_e | = | ||||
Rule | EX_akg_e | = | ||||
Rule | EX_co2_e | = | ||||
Rule | EX_acald_e | = | ||||
Rule | EX_glu__L_e | = | ||||
Rule | EX_mal__L_e | = | ||||
Rule | EX_fum_e | = | ||||
Rule | EX_fru_e | = | ||||
Rule | EX_succ_e | = | ||||
Rule | EX_h2o_e | = | ||||
Rule | EX_nh4_e | = | ||||
Rule | EX_ac_e | = | ||||
Rule | EX_glc__D_e | = | ||||
Rule | lb_EX_pi_e | = | ||||
Rule | lb_EX_for_e | = | ||||
Rule | lb_EX_h_e | = | ||||
Rule | lb_EX_o2_e | = | ||||
Rule | lb_EX_lac__D_e | = | ||||
Rule | lb_EX_pyr_e | = | ||||
Rule | lb_EX_etoh_e | = | ||||
Rule | lb_EX_gln__L_e | = | ||||
Rule | lb_EX_akg_e | = | ||||
Rule | lb_EX_co2_e | = | ||||
Rule | lb_EX_acald_e | = | ||||
Rule | lb_EX_glu__L_e | = | ||||
Rule | lb_EX_mal__L_e | = | ||||
Rule | lb_EX_fum_e | = | ||||
Rule | lb_EX_fru_e | = | ||||
Rule | lb_EX_succ_e | = | ||||
Rule | lb_EX_h2o_e | = | ||||
Rule | lb_EX_nh4_e | = | ||||
Rule | lb_EX_ac_e | = | ||||
Rule | lb_EX_glc__D_e | = |
type | Reactions [115] | name | equation | modifiers | formula | derived units | sbo | cvterm | |
---|---|---|---|---|---|---|---|---|---|
Reaction | fba__ACALD | Acetaldehyde dehydrogenase (acetylating) | ⇆ | fba__acald_c + fba__coa_c + fba__nad_c ⇆ fba__accoa_c + fba__h_c + fba__nadh_c | BQB_IS
ACALD |
||||
Reaction | fba__ACALDt | Acetaldehyde reversible transport | ⇆ | fba__acald_e ⇆ fba__acald_c | BQB_IS
ACALDt |
||||
Reaction | fba__ACKr | Acetate kinase | ⇆ | fba__ac_c + fba__atp_c ⇆ fba__actp_c + fba__adp_c | BQB_IS
ACKr |
||||
Reaction | fba__ACONTa | Aconitase (half-reaction A, Citrate hydro-lyase) | ⇆ | fba__cit_c ⇆ fba__acon_C_c + fba__h2o_c | BQB_IS
ACONTa |
||||
Reaction | fba__ACONTb | Aconitase (half-reaction B, Isocitrate hydro-lyase) | ⇆ | fba__acon_C_c + fba__h2o_c ⇆ fba__icit_c | BQB_IS
ACONTb |
||||
Reaction | fba__ACt2r | Acetate reversible transport via proton symport | ⇆ | fba__ac_e + fba__h_e ⇆ fba__ac_c + fba__h_c | BQB_IS
ACt2r |
||||
Reaction | fba__ADK1 | Adenylate kinase | ⇆ | fba__amp_c + fba__atp_c ⇆ 2.0 fba__adp_c | BQB_IS
ADK1 |
||||
Reaction | fba__AKGDH | 2-Oxogluterate dehydrogenase | ➞ | fba__akg_c + fba__coa_c + fba__nad_c ➞ fba__co2_c + fba__nadh_c + fba__succoa_c | BQB_IS
AKGDH |
||||
Reaction | fba__AKGt2r | 2 oxoglutarate reversible transport via symport | ⇆ | fba__akg_e + fba__h_e ⇆ fba__akg_c + fba__h_c | BQB_IS
AKGt2r |
||||
Reaction | fba__ALCD2x | Alcohol dehydrogenase (ethanol) | ⇆ | fba__etoh_c + fba__nad_c ⇆ fba__acald_c + fba__h_c + fba__nadh_c | BQB_IS
ALCD2x |
||||
Reaction | fba__ATPM | ATP maintenance requirement | ➞ | fba__atp_c + fba__h2o_c ➞ fba__adp_c + fba__h_c + fba__pi_c | BQB_IS
ATPM |
||||
Reaction | fba__ATPS4r | ATP synthase (four protons for one ATP) | ⇆ | fba__adp_c + 4.0 fba__h_e + fba__pi_c ⇆ fba__atp_c + fba__h2o_c + 3.0 fba__h_c | BQB_IS
ATPS4r |
||||
Reaction | fba__BIOMASS_Ecoli_core_w_GAM | Biomass Objective Function with GAM | ➞ | 1.496 fba__M_3pg_c + 3.7478 fba__accoa_c + 59.81 fba__atp_c + 0.361 fba__e4p_c + 0.0709 fba__f6p_c + 0.129 fba__g3p_c + 0.205 fba__g6p_c + 0.2557 fba__gln__L_c + 4.9414 fba__glu__L_c + 59.81 fba__h2o_c + 3.547 fba__nad_c + 13.0279 fba__nadph_c + 1.7867 fba__oaa_c + 0.5191 fba__pep_c + 2.8328 fba__pyr_c + 0.8977 fba__r5p_c ➞ 59.81 fba__adp_c + 4.1182 fba__akg_c + 3.7478 fba__coa_c + 59.81 fba__h_c + 3.547 fba__nadh_c + 13.0279 fba__nadp_c + 59.81 fba__pi_c | BQB_IS
Ecoli_core_w_GAM |
||||
Reaction | fba__CO2t | CO2 transporter via diffusion | ⇆ | fba__co2_e ⇆ fba__co2_c | BQB_IS
CO2t |
||||
Reaction | fba__CS | Citrate synthase | ➞ | fba__accoa_c + fba__h2o_c + fba__oaa_c ➞ fba__cit_c + fba__coa_c + fba__h_c | BQB_IS
CS |
||||
Reaction | fba__CYTBD | Cytochrome oxidase bd (ubiquinol-8: 2 protons) | ➞ | 2.0 fba__h_c + 0.5 fba__o2_c + fba__q8h2_c ➞ fba__h2o_c + 2.0 fba__h_e + fba__q8_c | BQB_IS
CYTBD |
||||
Reaction | fba__D_LACt2 | D lactate transport via proton symport | ⇆ | fba__h_e + fba__lac__D_e ⇆ fba__h_c + fba__lac__D_c | BQB_IS
D_LACt2 |
||||
Reaction | fba__ENO | Enolase | ⇆ | fba__M_2pg_c ⇆ fba__h2o_c + fba__pep_c | BQB_IS
ENO |
||||
Reaction | fba__ETOHt2r | ETOHt2r | ⇆ | fba__etoh_e + fba__h_e ⇆ fba__etoh_c + fba__h_c | BQB_IS
ETOHt2r |
||||
Reaction | dummy_EX_ac_e | Acetate exchange | ⇆ | fba__ac_e ⇆ | BQB_IS
ac |
||||
Reaction | dummy_EX_acald_e | Acetaldehyde exchange | ⇆ | fba__acald_e ⇆ | BQB_IS
acald |
||||
Reaction | dummy_EX_akg_e | 2-Oxoglutarate exchange | ⇆ | fba__akg_e ⇆ | BQB_IS
akg |
||||
Reaction | dummy_EX_co2_e | CO2 exchange | ⇆ | fba__co2_e ⇆ | BQB_IS
co2 |
||||
Reaction | dummy_EX_etoh_e | Ethanol exchange | ⇆ | fba__etoh_e ⇆ | BQB_IS
etoh |
||||
Reaction | dummy_EX_for_e | Formate exchange | ⇆ | fba__for_e ⇆ | BQB_IS
for |
||||
Reaction | dummy_EX_fru_e | D-Fructose exchange | ⇆ | fba__fru_e ⇆ | BQB_IS
fru |
||||
Reaction | dummy_EX_fum_e | Fumarate exchange | ⇆ | fba__fum_e ⇆ | BQB_IS
fum |
||||
Reaction | dummy_EX_glc__D_e | D-Glucose exchange | ⇆ | fba__glc__D_e ⇆ | BQB_IS
glc__D |
||||
Reaction | dummy_EX_gln__L_e | L-Glutamine exchange | ⇆ | fba__gln__L_e ⇆ | BQB_IS
gln__L |
||||
Reaction | dummy_EX_glu__L_e | L-Glutamate exchange | ⇆ | fba__glu__L_e ⇆ | BQB_IS
glu__L |
||||
Reaction | dummy_EX_h_e | H+ exchange | ⇆ | fba__h_e ⇆ | BQB_IS
h |
||||
Reaction | dummy_EX_h2o_e | H2O exchange | ⇆ | fba__h2o_e ⇆ | BQB_IS
h2o |
||||
Reaction | dummy_EX_lac__D_e | D-lactate exchange | ⇆ | fba__lac__D_e ⇆ | BQB_IS
lac__D |
||||
Reaction | dummy_EX_mal__L_e | L-Malate exchange | ⇆ | fba__mal__L_e ⇆ | BQB_IS
mal__L |
||||
Reaction | dummy_EX_nh4_e | Ammonia exchange | ⇆ | fba__nh4_e ⇆ | BQB_IS
nh4 |
||||
Reaction | dummy_EX_o2_e | O2 exchange | ⇆ | fba__o2_e ⇆ | BQB_IS
o2 |
||||
Reaction | dummy_EX_pi_e | Phosphate exchange | ⇆ | fba__pi_e ⇆ | BQB_IS
pi |
||||
Reaction | dummy_EX_pyr_e | Pyruvate exchange | ⇆ | fba__pyr_e ⇆ | BQB_IS
pyr |
||||
Reaction | dummy_EX_succ_e | Succinate exchange | ⇆ | fba__succ_e ⇆ | BQB_IS
succ |
||||
Reaction | fba__FBA | Fructose-bisphosphate aldolase | ⇆ | fba__fdp_c ⇆ fba__dhap_c + fba__g3p_c | BQB_IS
FBA |
||||
Reaction | fba__FBP | Fructose-bisphosphatase | ➞ | fba__fdp_c + fba__h2o_c ➞ fba__f6p_c + fba__pi_c | BQB_IS
FBP |
||||
Reaction | fba__FORt2 | Formate transport in via proton symport | ➞ | fba__for_e + fba__h_e ➞ fba__for_c + fba__h_c | BQB_IS
FORt2 |
||||
Reaction | fba__FORti | Formate transport via diffusion | ➞ | fba__for_c ➞ fba__for_e | BQB_IS
FORti |
||||
Reaction | fba__FRD7 | Fumarate reductase | ➞ | fba__fum_c + fba__q8h2_c ➞ fba__q8_c + fba__succ_c | BQB_IS
FRD7 |
||||
Reaction | fba__FRUpts2 | Fructose transport via PEP:Pyr PTS (f6p generating) | ➞ | fba__fru_e + fba__pep_c ➞ fba__f6p_c + fba__pyr_c | BQB_IS
FRUpts2 |
||||
Reaction | fba__FUM | Fumarase | ⇆ | fba__fum_c + fba__h2o_c ⇆ fba__mal__L_c | BQB_IS
FUM |
||||
Reaction | fba__FUMt2_2 | Fumarate transport via proton symport (2 H) | ➞ | fba__fum_e + 2.0 fba__h_e ➞ fba__fum_c + 2.0 fba__h_c | BQB_IS
FUMt2_2 |
||||
Reaction | fba__G6PDH2r | Glucose 6-phosphate dehydrogenase | ⇆ | fba__g6p_c + fba__nadp_c ⇆ fba__M_6pgl_c + fba__h_c + fba__nadph_c | BQB_IS
G6PDH2r |
||||
Reaction | fba__GAPD | Glyceraldehyde-3-phosphate dehydrogenase | ⇆ | fba__g3p_c + fba__nad_c + fba__pi_c ⇆ fba__M_13dpg_c + fba__h_c + fba__nadh_c | BQB_IS
GAPD |
||||
Reaction | fba__GLCpts | D-glucose transport via PEP:Pyr PTS | ➞ | fba__glc__D_e + fba__pep_c ➞ fba__g6p_c + fba__pyr_c | BQB_IS
GLCpts |
||||
Reaction | fba__GLNS | Glutamine synthetase | ➞ | fba__atp_c + fba__glu__L_c + fba__nh4_c ➞ fba__adp_c + fba__gln__L_c + fba__h_c + fba__pi_c | BQB_IS
GLNS |
||||
Reaction | fba__GLNabc | GLNabc | ➞ | fba__atp_c + fba__gln__L_e + fba__h2o_c ➞ fba__adp_c + fba__gln__L_c + fba__h_c + fba__pi_c | BQB_IS
GLNabc |
||||
Reaction | fba__GLUDy | Glutamate dehydrogenase (NADP) | ⇆ | fba__glu__L_c + fba__h2o_c + fba__nadp_c ⇆ fba__akg_c + fba__h_c + fba__nadph_c + fba__nh4_c | BQB_IS
GLUDy |
||||
Reaction | fba__GLUN | Glutaminase | ➞ | fba__gln__L_c + fba__h2o_c ➞ fba__glu__L_c + fba__nh4_c | BQB_IS
GLUN |
||||
Reaction | fba__GLUSy | Glutamate synthase (NADPH) | ➞ | fba__akg_c + fba__gln__L_c + fba__h_c + fba__nadph_c ➞ 2.0 fba__glu__L_c + fba__nadp_c | BQB_IS
GLUSy |
||||
Reaction | fba__GLUt2r | L glutamate transport via proton symport reversible | ⇆ | fba__glu__L_e + fba__h_e ⇆ fba__glu__L_c + fba__h_c | BQB_IS
GLUt2r |
||||
Reaction | fba__GND | Phosphogluconate dehydrogenase | ➞ | fba__M_6pgc_c + fba__nadp_c ➞ fba__co2_c + fba__nadph_c + fba__ru5p__D_c | BQB_IS
GND |
||||
Reaction | fba__H2Ot | H2O transport via diffusion | ⇆ | fba__h2o_e ⇆ fba__h2o_c | BQB_IS
H2Ot |
||||
Reaction | fba__ICDHyr | Isocitrate dehydrogenase (NADP) | ⇆ | fba__icit_c + fba__nadp_c ⇆ fba__akg_c + fba__co2_c + fba__nadph_c | BQB_IS
ICDHyr |
||||
Reaction | fba__ICL | Isocitrate lyase | ➞ | fba__icit_c ➞ fba__glx_c + fba__succ_c | BQB_IS
ICL |
||||
Reaction | fba__LDH_D | D-lactate dehydrogenase | ⇆ | fba__lac__D_c + fba__nad_c ⇆ fba__h_c + fba__nadh_c + fba__pyr_c | BQB_IS
LDH_D |
||||
Reaction | fba__MALS | Malate synthase | ➞ | fba__accoa_c + fba__glx_c + fba__h2o_c ➞ fba__coa_c + fba__h_c + fba__mal__L_c | BQB_IS
MALS |
||||
Reaction | fba__MALt2_2 | Malate transport via proton symport (2 H) | ➞ | 2.0 fba__h_e + fba__mal__L_e ➞ 2.0 fba__h_c + fba__mal__L_c | BQB_IS
MALt2_2 |
||||
Reaction | fba__MDH | Malate dehydrogenase | ⇆ | fba__mal__L_c + fba__nad_c ⇆ fba__h_c + fba__nadh_c + fba__oaa_c | BQB_IS
MDH |
||||
Reaction | fba__ME1 | Malic enzyme (NAD) | ➞ | fba__mal__L_c + fba__nad_c ➞ fba__co2_c + fba__nadh_c + fba__pyr_c | BQB_IS
ME1 |
||||
Reaction | fba__ME2 | Malic enzyme (NADP) | ➞ | fba__mal__L_c + fba__nadp_c ➞ fba__co2_c + fba__nadph_c + fba__pyr_c | BQB_IS
ME2 |
||||
Reaction | fba__NADH16 | NADH dehydrogenase (ubiquinone-8 & 3 protons) | ➞ | 4.0 fba__h_c + fba__nadh_c + fba__q8_c ➞ 3.0 fba__h_e + fba__nad_c + fba__q8h2_c | BQB_IS
NADH16 |
||||
Reaction | fba__NADTRHD | NAD transhydrogenase | ➞ | fba__nad_c + fba__nadph_c ➞ fba__nadh_c + fba__nadp_c | BQB_IS
NADTRHD |
||||
Reaction | fba__NH4t | Ammonia reversible transport | ⇆ | fba__nh4_e ⇆ fba__nh4_c | BQB_IS
NH4t |
||||
Reaction | fba__O2t | O2 transport diffusion | ⇆ | fba__o2_e ⇆ fba__o2_c | BQB_IS
O2t |
||||
Reaction | fba__PDH | Pyruvate dehydrogenase | ➞ | fba__coa_c + fba__nad_c + fba__pyr_c ➞ fba__accoa_c + fba__co2_c + fba__nadh_c | BQB_IS
PDH |
||||
Reaction | fba__PFK | Phosphofructokinase | ➞ | fba__atp_c + fba__f6p_c ➞ fba__adp_c + fba__fdp_c + fba__h_c | BQB_IS
PFK |
||||
Reaction | fba__PFL | Pyruvate formate lyase | ➞ | fba__coa_c + fba__pyr_c ➞ fba__accoa_c + fba__for_c | BQB_IS
PFL |
||||
Reaction | fba__PGI | Glucose-6-phosphate isomerase | ⇆ | fba__g6p_c ⇆ fba__f6p_c | BQB_IS
PGI |
||||
Reaction | fba__PGK | Phosphoglycerate kinase | ⇆ | fba__M_3pg_c + fba__atp_c ⇆ fba__M_13dpg_c + fba__adp_c | BQB_IS
PGK |
||||
Reaction | fba__PGL | 6-phosphogluconolactonase | ➞ | fba__M_6pgl_c + fba__h2o_c ➞ fba__M_6pgc_c + fba__h_c | BQB_IS
PGL |
||||
Reaction | fba__PGM | Phosphoglycerate mutase | ⇆ | fba__M_2pg_c ⇆ fba__M_3pg_c | BQB_IS
PGM |
||||
Reaction | fba__PIt2r | Phosphate reversible transport via symport | ⇆ | fba__h_e + fba__pi_e ⇆ fba__h_c + fba__pi_c | BQB_IS
PIt2r |
||||
Reaction | fba__PPC | Phosphoenolpyruvate carboxylase | ➞ | fba__co2_c + fba__h2o_c + fba__pep_c ➞ fba__h_c + fba__oaa_c + fba__pi_c | BQB_IS
PPC |
||||
Reaction | fba__PPCK | Phosphoenolpyruvate carboxykinase | ➞ | fba__atp_c + fba__oaa_c ➞ fba__adp_c + fba__co2_c + fba__pep_c | BQB_IS
PPCK |
||||
Reaction | fba__PPS | Phosphoenolpyruvate synthase | ➞ | fba__atp_c + fba__h2o_c + fba__pyr_c ➞ fba__amp_c + 2.0 fba__h_c + fba__pep_c + fba__pi_c | BQB_IS
PPS |
||||
Reaction | fba__PTAr | Phosphotransacetylase | ⇆ | fba__accoa_c + fba__pi_c ⇆ fba__actp_c + fba__coa_c | BQB_IS
PTAr |
||||
Reaction | fba__PYK | Pyruvate kinase | ➞ | fba__adp_c + fba__h_c + fba__pep_c ➞ fba__atp_c + fba__pyr_c | BQB_IS
PYK |
||||
Reaction | fba__PYRt2 | Pyruvate transport in via proton symport | ⇆ | fba__h_e + fba__pyr_e ⇆ fba__h_c + fba__pyr_c | BQB_IS
PYRt2 |
||||
Reaction | fba__RPE | Ribulose 5-phosphate 3-epimerase | ⇆ | fba__ru5p__D_c ⇆ fba__xu5p__D_c | BQB_IS
RPE |
||||
Reaction | fba__RPI | Ribose-5-phosphate isomerase | ⇆ | fba__r5p_c ⇆ fba__ru5p__D_c | BQB_IS
RPI |
||||
Reaction | fba__SUCCt2_2 | Succinate transport via proton symport (2 H) | ➞ | 2.0 fba__h_e + fba__succ_e ➞ 2.0 fba__h_c + fba__succ_c | BQB_IS
SUCCt2_2 |
||||
Reaction | fba__SUCCt3 | Succinate transport out via proton antiport | ➞ | fba__h_e + fba__succ_c ➞ fba__h_c + fba__succ_e | BQB_IS
SUCCt3 |
||||
Reaction | fba__SUCDi | Succinate dehydrogenase (irreversible) | ➞ | fba__q8_c + fba__succ_c ➞ fba__fum_c + fba__q8h2_c | BQB_IS
SUCDi |
||||
Reaction | fba__SUCOAS | Succinyl-CoA synthetase (ADP-forming) | ⇆ | fba__atp_c + fba__coa_c + fba__succ_c ⇆ fba__adp_c + fba__pi_c + fba__succoa_c | BQB_IS
SUCOAS |
||||
Reaction | fba__TALA | Transaldolase | ⇆ | fba__g3p_c + fba__s7p_c ⇆ fba__e4p_c + fba__f6p_c | BQB_IS
TALA |
||||
Reaction | fba__THD2 | NAD(P) transhydrogenase | ➞ | 2.0 fba__h_e + fba__nadh_c + fba__nadp_c ➞ 2.0 fba__h_c + fba__nad_c + fba__nadph_c | BQB_IS
THD2 |
||||
Reaction | fba__TKT1 | Transketolase | ⇆ | fba__r5p_c + fba__xu5p__D_c ⇆ fba__g3p_c + fba__s7p_c | BQB_IS
TKT1 |
||||
Reaction | fba__TKT2 | Transketolase | ⇆ | fba__e4p_c + fba__xu5p__D_c ⇆ fba__f6p_c + fba__g3p_c | BQB_IS
TKT2 |
||||
Reaction | fba__TPI | Triose-phosphate isomerase | ⇆ | fba__dhap_c ⇆ fba__g3p_c | BQB_IS
TPI |
||||
Reaction | update__update_pi_e | ⇆ | pi_e ⇆ | ||||||
Reaction | update__update_for_e | ⇆ | for_e ⇆ | ||||||
Reaction | update__update_h_e | ⇆ | h_e ⇆ | ||||||
Reaction | update__update_o2_e | ⇆ | o2_e ⇆ | ||||||
Reaction | update__update_lac__D_e | ⇆ | lac__D_e ⇆ | ||||||
Reaction | update__update_pyr_e | ⇆ | pyr_e ⇆ | ||||||
Reaction | update__update_etoh_e | ⇆ | etoh_e ⇆ | ||||||
Reaction | update__update_gln__L_e | ⇆ | gln__L_e ⇆ | ||||||
Reaction | update__update_akg_e | ⇆ | akg_e ⇆ | ||||||
Reaction | update__update_co2_e | ⇆ | co2_e ⇆ | ||||||
Reaction | update__update_acald_e | ⇆ | acald_e ⇆ | ||||||
Reaction | update__update_glu__L_e | ⇆ | glu__L_e ⇆ | ||||||
Reaction | update__update_mal__L_e | ⇆ | mal__L_e ⇆ | ||||||
Reaction | update__update_fum_e | ⇆ | fum_e ⇆ | ||||||
Reaction | update__update_fru_e | ⇆ | fru_e ⇆ | ||||||
Reaction | update__update_succ_e | ⇆ | succ_e ⇆ | ||||||
Reaction | update__update_h2o_e | ⇆ | h2o_e ⇆ | ||||||
Reaction | update__update_nh4_e | ⇆ | nh4_e ⇆ | ||||||
Reaction | update__update_ac_e | ⇆ | ac_e ⇆ | ||||||
Reaction | update__update_glc__D_e | ⇆ | glc__D_e ⇆ |