runtransit module

class runtransit.TnSeekFrame(parent)[source]

Bases: transit.transit_gui.MainFrame

Exit(event)[source]

Exit Menu Item

HideAllOptions()[source]
HideGlobalOptions()[source]
HideProgressSection()[source]
LoessPrevFunc(event)[source]
MethodSelectFunc(selected_name, test='')[source]
OpenFile(DIR='.', FILE='', WC='')[source]

Create and show the Open FileDialog

ResetProgress()[source]
RunMethod(event)[source]
SaveFile(DIR=None, FILE='', WC='')[source]

Create and show the Save FileDialog

ShowGlobalOptions()[source]
ShowProgressSection()[source]
aboutFunc(event)[source]
addFile(data)[source]
addFileFunc(event)[source]
allSelected(col=5)[source]
allViewFunc(event, gene='')[source]
annotationFileFunc(event)[source]
annotationGFF3_to_PT(event)[source]
annotationPTT_to_PT(event)[source]
annotationPT_to_GFF3(event)[source]
annotationPT_to_PTT(event)[source]
chooseNormalization()[source]
choseMethodsMenu(selected_name, event)[source]
convertToCombinedWig(dataset_list, annotationPath, path)[source]
convertToCombinedWigGUI(datasets)[source]
convertToIGV(dataset_list, annotationPath, path)[source]
convertToIGVGUI(datasets)[source]
ctrlAll(col=5)[source]
ctrlRemoveFunc(event)[source]
ctrlSelected(col=5)[source]
ctrlViewFunc(event, gene='')[source]
displayFileFunc(event)[source]
documentationFunc(event)[source]
expAll(col=5)[source]
expRemoveFunc(event)[source]
expSelected(col=5)[source]
expViewFunc(event, gene='')[source]
fileActionFunc(event)[source]
fileSelected(event)[source]
filterMethodsByTransposon()[source]
finishRun(msg)[source]
graphGeneCounts(dataset_name, dataset_type, dataset_path)[source]
graphRankedZbar(dataset_name, dataset_type, dataset_path)[source]
graphVolcanoPlot(dataset_name, dataset_type, dataset_path)[source]
loadCtrlFileFunc(event)[source]
loadExpFileFunc(event)[source]
onHimar1Checked(event)[source]
onTn5Checked(event)[source]
qcFunc(event)[source]
saveHistogram(msg)[source]
scatterFunc(event)[source]
selectedToCombinedWig(event)[source]
selectedToIGV(event)[source]
setProgressRange(msg)[source]
updateGraphChoices(dataset_type)[source]
updateProgress(msg)[source]
updateStatus(msg)[source]
runtransit.msg()[source]