funkyheatmappy¶
Funkyheatmap in Python: Generating Funky Heatmaps for Data Frames
Features¶
Data input
Column info
Row info
Column groups
Row groups
Palettes
Geom: funkyrect
Geom: rect
Geom: bar
Geom: pie
Geom: text
Numerical transformations
Positioning options
Subfigure labels
Installation¶
You can install funkyheatmap like so::
pip install git+https://github.com/funkyheatmap/funkyheatmappy
You can also download funkyheatmap as a standalone executable or a Nextflow pipeline.
More information¶
The reference documentation on funkyheatmap() details the exact formats of each annotation object that you can pass to it.
In this python module we use funkyheatmap to regenerate the figures from Saelens et al. 2019, doi:10.1038/s41587-019-0071-9.
Contents:¶
Feedback¶
If you have any suggestions or questions about funkyheatmappy feel free to email me at artuur_couckuyt@hotmail.com.
If you encounter any errors or problems with funkyheatmappy, please let me know! Open an Issue at the GitHub http://github.com/funkyheatmap/funkyheatmappy main repository.